Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0183 ATGTTATACTGTTTGAAATTATTTCAGAAGAAAGCCAAAAGGGCAGTAGCTGCCATGCTTACAAGATCTAAAGAAAGTGAGACTGCTGAAGATATGGATCTGACAGAGAAGGAAAGAATTGATAAGGAGCAGAAAGAGCTCATACCTCTGTTGACAGGTGGAAAGTTGAAGCAACATCAAATGAAGGGTGTCAAATGGTTGATCTCCTTGTGGCAAAATGGACTGAATGGGATTTTGGCCGATCAAATGGGTCTTGGGAAGACAATCCAAACTATTGGTTTCCTTGCACATCTGAAAGGGAAAGCTCATTCAATTGCAACCAGAAACATCGCATTTTTCTATCCACCTGTCAATGAGATGATTGAACAATGTGGGAAATTCCGTTTACTAGACCGTCTGCTGGCTCATTTACTTGCACGGAAACACAGAGTTCTACTCTTCAGCCAGTGGACTAAAATTTTGGATATAATGGATTACTATTTTAGTGAAAAGGGCCTTGAAGTTTGCAGAATTGATGGCAGTTTACAGCTAAATGAAACGAAAAGACAGGGGCCAGAATCTTGTTTGCAATATACTTCTACTGACATTAGCACCTGTTCTGAAAAACATTGGTTCTGATTCAGGAGTTCAAAAAACCTTGCTGCAGCAGACACTTGTATCATTTATGACAGTCATTGGAATCCTCAGATGGATTTACAGGCCATGGATAGATGTCACAGAATAGGTCAAACTAAGCCTGTTCATGTTTACAGGCTTGCGACAGCACGCTCCGTGGAGGTACATGGCTACCTTGTATTGTGGTTTGGGGATGCGATTGATGTTTGCCTATCAGGTCGCATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGGAAAGGGGCAATTTCATCAAGAACGGATGAAGTCCAACCCTATGGATATCAAAGAAGAGGTCCGTACCTTAGCAGTTTCTTTTCTATTAATTTCCCAATTTTGCTTTCCTACGATCTTCTGTGATGAGGAATTGTTGGAAATGCTTCGCGAGGAAGAATCTGCTGAAGACAAAGCGATCCAAACAGATATTAGTGATGAAGACTTGGAGAAGCTTTTGGATCGCAGTGATCTTGCCTCTGGTAACTTAAATTGTACGAGCAAAATTCCTCTTAAAGGGCCTAGTTGGGAGGTGGTGATTCCAACTGGGAGCGTGCTTTCTACTCTGAACAGCTAA 1221 0.4161 MLYCLKLFQKKAKRAVAAMLTRSKESETAEDMDLTEKERIDKEQKELIPLLTGGKLKQHQMKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKAHSIATRNIAFFYPPVNEMIEQCGKFRLLDRLLAHLLARKHRVLLFSQWTKILDIMDYYFSEKGLEVCRIDGSLQLNETKRQGPESCLQYTSTDISTCSEKHWFXFRSSKNLAAADTCIIYDSHWNPQMDLQAMDRCHRIGQTKPVHVYRLATARSVEVHGYLVLWFGDAIDVCLSGRMLKRAFSKLKLEHVVIGKGQFHQERMKSNPMDIKEEVRTLAVSFLLISQFCFPTIFCDEELLEMLREEESAEDKAIQTDISDEDLEKLLDRSDLASGNLNCTSKIPLKGPSWEVVIPTGSVLSTLNS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0183 406 CDD SF2_C_SNF 115 252 - -
Lele51g0183 406 Gene3D - 21 108 IPR038718 -
Lele51g0183 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 306 IPR027417 -
Lele51g0183 406 Pfam Helicase conserved C-terminal domain 128 242 IPR001650 -
Lele51g0183 406 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 129 313 IPR001650 -
Lele51g0183 406 Gene3D - 109 266 IPR027417 -
Lele51g0183 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 103 IPR027417 -
Lele51g0183 406 PANTHER SNF2/RAD54 HELICASE FAMILY 22 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0183 Lele-ChrLele51 1047844 1052066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0183 134 259 RAD5 or RAD16-like Gene Family AT5G22750 34.091 8.62e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele51g0183 Helicase_C 2.5e-07 CL0023