Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0173 ATGGGCGACGCTACACTTATGGACTCTATGGACTTGAAGGTGAGAGAGCTATTGAAGGAAGTACAACTAGACTATTCTTCTCCATTCACCAAGTTCGTTGATGACACTGTCTCCGCCATCAAAGCATCCATCAATAAGATCCCGGAAGATGTTAAGGTGACGGCTAATACAGCTCCATATTTTGTAAGGGACACTGGCGCGGATAAAGTTGAGTTCAAGTTCAAGAAGCCAACATCTATCAACATCGGGGGCAGTTATGCCACGCAAACTCTTGCAAAACCTGAAGTAAATGTAGACCTTATCATCAGGTTGCCTAAGGAGAGTTTCCACGAGAAAGATTACTTAAATTATAGATACCATGCCAAGAGATGCCTGTATCTTTGCTTGCTGAAAAAGTATTTGGATACTTCTGCATCTTTTGATAAGGTTGAATGGTCTACACTGCAAAATGAAGCCCGGAAACCTATACTAATTCTTTATCCAGCTGCAAAGCTTGCTGAAGTTCCTGGTGTTTGTATAAGAATAATTCCATCAGCAATGTCTTTATTTGGCATATCGAGGTTGAACCTGAATCGTAACAACATTCATACTCCTGATCAAGGGACAGGTCTTGAGGCTACACCAAATTACAATAGTAGTATTCTGGAAGATATGTTTTTAGAGGATACCGAATTTATTGATAAAAGTTTTTCTAGATGGAAGGAACTAAGAGAAGCTTCAACTTTGCTAAAGGTTTGGGCGCAACAGAGAAGTTCAATATATGATTATGATTGCCTGAGTGGATTTTTGATCTCTGCAATTCTGGCATACCTTCTGACAAGGCAGCAAATCAGCACATCGATGAAGGCACTCCAAATATTTCGTGTTACCATGAACTTTATTGCCAATTCAGAGTTGTGGAGCCATGGGCTTTATTTTCCTCAGGAAGGCCAGAGTAACATTACAAAAGAGGAAAGGCTTCAATTTAAAAAGTCATTTCCAGTTGTTATTTGTAATCCATCTGGAAGATTCAATTTGGCTTTCCGGATGTCTAGAATTGGTTTTGCTGAGCTTCGAGATGAGGCTGCTTTGACACTTAAATGCTTGGAGAAGTGTAGAGATGGTGGATTTGAGGAAATTTTTATGACTAAGATTGACTATGCTGCTAAATACGACTACTGCATAAGAATAAATTTAAAGGGAAAGAAGGAGGTACATGCATTGGGATTTTGTTCAGACAATGAATGTTGGAGATTGTATGAGGAGAAAGTACATGGTATTCTAACTAAAGGGTTGAATGATAGAGCAAAGTTCATTCGTGTTACCTGGAGAAATGCGCAGTCACCATGGAGTGTAGATGATGGCTTGTCTGCACTTGATAAAGAACCACTACTTATTGGAATTTCAGTGAGTAATTTGGAGAAAGCATTTAGGATCGTTGATATTGGCCCAAATGCTGAAAATAGTGAAGAGGCGCTAGAATTTCGGAAATTTTGGGGGGAAAAAGCTGAACTTAGGCGATTTAAAGACGGTAGAATTGCAGAAAGCACAGTCTGGGAAAGTGATAAGTCCACAAGACATCTTATTTTAAAAAGAATAGTGGAGCATATACTCAGTCGACATCTCTCTCTGTTGAAAGAAAATATTGTAGTTGCTGTGGATCAACTTGATTTCTCTTTGCTACATGGAGCTGGCGATCCAATATCATATTTTGAGAGTTTGCTTAAGGCATTTGATGTCTTATCGAAGCGCTTGCGTCTAGTTCCAGACATCCCTTTGAAGGTGTCCAGTGTACAACCTTTAAACTCTGCTTTCAGGTCTACATCAGTCTTCCCTCCTGAGCCTCATCTTTTGGCTAATGAAAACATTGAGTCTGTTAAACTGAATAGTGCCATTCCTTCGTGCATTCAACCATTGGAAGTTATGATTCAGCTGGAAGGTTCTGGTAACTGGCCAATGGATGAAGTTGCAGTGGAAAAGACAAAATCTGCCTTCCTTCTGCAGATTGCAGAGAGTCTTCAAAAACTATGGGGAATGACATGTATTGCGACTGAGGATAACGTAGATGTATTAGTATCTGGATATGCATTTCGTCTAAAAATTTTGCATGAGAGGGGCCTCAGTTTGCTCAGCAAGGAAAGTGAGAATGGTCAAGCAAAGCGTGTTTCTACGATGGACAAGAAACTTTTCATCTGTAGTCAGCATTCTAGCATGATTAATGGATTACAAAGCCGTTACCCAATATATGGATCAGTAGTTAGACTTGCAAAACGATGGGCTGCTTCACATCTATTTTCAGCTTGCTTGGTAGAAGAAGCAGTTGAGCTTTTGGTTGCTTATGTCTTTCTTAATCCTTTGCCATTTAACACTCCTTGCTCAAGGATAACTGGATTTTTAAGATTCCTGCGGTTACTCTCAGAGTATGACTGGACATTCTCCTCATTGGTTGTTGACATAAATAATGACTTGAGCCAAAGTGATAAGAAAGAAATAACTGATAACTTTATGTTAAGCAGAAAGGTTCAGGGAGAGACTGGACTAAGGCCGGCTCTGTTCATAGCTACAGTTTATGATAAAGCATCTGAGGCTTGGACTGGATCATCACCAAGTGCATTGGAACTTAAAAGGTTGGTGGCTTATGCCCGTAGTAGTGCAAACTTGTTGACGAAACTTATATTTCAGGATCACATTGGTCCATACAGATGGGAGGGTCTTTTTCGAACTCCTTTGAACACTTATGATGCCATAGTTCTTCTTCACAGAGATAAACTCCCTTATCCTCAAAGACTTCTCTTCCCGTCAGAAGTTGATCATGGAAAACATATTGCTAGAGGACATGCTAGCAAGCGTTTCCAACCTGTGCTTTTGCCAAGAGATTTGAAGGGGAGGCCAGATGAAGTTAAAAGCAAGTTGCTGGTTGACTTTGATCCATTAAGGTGCTTCATCAGGGATTTGGAGAAAGAGTTCTCCACCACGTTCAAGGTATGGTACGATTTGTTGGGAGGTGATGCTATTGGCCTAACGTGGGGTGAAAGGTATTCTTCAAAGAAACGGAAGCAAGAGGAAGTAGTTGAGGAGCAGGGACATGACCCAAGCAAGTTGCTGAAATCAGTAGGTGATGCTGGGAAAGGGTTTGTGAAGAGTGTTTACTTTCTCAAGCCCCCAAGGCCCTCAAATTAA 3159 0.4058 MGDATLMDSMDLKVRELLKEVQLDYSSPFTKFVDDTVSAIKASINKIPEDVKVTANTAPYFVRDTGADKVEFKFKKPTSINIGGSYATQTLAKPEVNVDLIIRLPKESFHEKDYLNYRYHAKRCLYLCLLKKYLDTSASFDKVEWSTLQNEARKPILILYPAAKLAEVPGVCIRIIPSAMSLFGISRLNLNRNNIHTPDQGTGLEATPNYNSSILEDMFLEDTEFIDKSFSRWKELREASTLLKVWAQQRSSIYDYDCLSGFLISAILAYLLTRQQISTSMKALQIFRVTMNFIANSELWSHGLYFPQEGQSNITKEERLQFKKSFPVVICNPSGRFNLAFRMSRIGFAELRDEAALTLKCLEKCRDGGFEEIFMTKIDYAAKYDYCIRINLKGKKEVHALGFCSDNECWRLYEEKVHGILTKGLNDRAKFIRVTWRNAQSPWSVDDGLSALDKEPLLIGISVSNLEKAFRIVDIGPNAENSEEALEFRKFWGEKAELRRFKDGRIAESTVWESDKSTRHLILKRIVEHILSRHLSLLKENIVVAVDQLDFSLLHGAGDPISYFESLLKAFDVLSKRLRLVPDIPLKVSSVQPLNSAFRSTSVFPPEPHLLANENIESVKLNSAIPSCIQPLEVMIQLEGSGNWPMDEVAVEKTKSAFLLQIAESLQKLWGMTCIATEDNVDVLVSGYAFRLKILHERGLSLLSKESENGQAKRVSTMDKKLFICSQHSSMINGLQSRYPIYGSVVRLAKRWAASHLFSACLVEEAVELLVAYVFLNPLPFNTPCSRITGFLRFLRLLSEYDWTFSSLVVDINNDLSQSDKKEITDNFMLSRKVQGETGLRPALFIATVYDKASEAWTGSSPSALELKRLVAYARSSANLLTKLIFQDHIGPYRWEGLFRTPLNTYDAIVLLHRDKLPYPQRLLFPSEVDHGKHIARGHASKRFQPVLLPRDLKGRPDEVKSKLLVDFDPLRCFIRDLEKEFSTTFKVWYDLLGGDAIGLTWGERYSSKKRKQEEVVEEQGHDPSKLLKSVGDAGKGFVKSVYFLKPPRPSN 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0173 1052 Pfam Nrap protein domain 3 382 536 IPR035368 -
Lele51g0173 1052 Pfam Nrap protein PAP/OAS-like domain 236 377 IPR035367 -
Lele51g0173 1052 Pfam Nrap protein domain 1 98 222 IPR035082 -
Lele51g0173 1052 Pfam Nrap protein domain 6 903 1042 IPR035371 -
Lele51g0173 1052 MobiDBLite consensus disorder prediction 1011 1031 - -
Lele51g0173 1052 PANTHER NUCLEOLAR RNA-ASSOCIATED PROTEIN 8 1043 IPR005554 -
Lele51g0173 1052 MobiDBLite consensus disorder prediction 1011 1026 - -
Lele51g0173 1052 Pfam Nrap protein nucleotidyltransferase domain 4 562 736 IPR035369 -
Lele51g0173 1052 Gene3D - 210 380 - -
Lele51g0173 1052 FunFam Nucleolar protein 6 210 380 - -
Lele51g0173 1052 Pfam Nrap protein PAP/OAS1-like domain 5 739 888 IPR035370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0173 Lele-ChrLele51 991765 1000252 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0173 51 991765 1000252 Lele53g0052 53 407137 407976 CCT
Lele51g0173 51 991765 1000252 Lele54g0053 54 449670 450517 CCT
Lele51g0173 51 991765 1000252 Lele55g1445 55 20663817 20664654 CCT
Lele51g0173 51 991765 1000252 Lele56g1380 56 16919213 16920045 CCT
Lele49g0160 49 959334 967794 Lele51g0173 51 991765 1000252 hybridization
Lele50g0178 50 1040212 1050913 Lele51g0173 51 991765 1000252 hybridization