Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0172 ATGATGCCCCGTTGCTGTAGCTCCCAGGGGCACGTGATGGGACCGTGTACGTGTGGTATGATCCACGGTCAAACCAATTCCTTCTCTATGCTATTCTCGATGCCCAACAACCACAAATCCTATGGTGACTGCGGCGACATGTATTCTTTCGCCGCCTCTCCTTCCTCTTCTGTTGACTGCACCCTCTCTCTCGGCACCCCATCCACCCGTTTATCCCAGGACGAAGAAAAACGCAAGCCCCGTGACCATCGCTCCGTTTCAAACTTCTGTTGGGACTTATTACAATCCCACACTAAGTCCACTCGTGGCACCAATACTAGTAACTCCTCCAATAATGATCCCCTCCTCGCTCGTCGTTGTGCCAACTGCGACACCACTTCCACTCCCCTCTGGAGAAACGGCCCTCGAGGCCCCAAGTCACTATGCAATGCCTGTGGGATTAGATTCAAGAAGGAAGAGAGAAGGGCGGGTGCTGTAGCCGCCACAACGGCGGCCAACTCAAGCGACGTCATGGACTCGGCGCAGATGTTTTCTGGACACCACAACAATTCATGGTACGCGCACTCTCAGAGCCAGAAAATGCAGTTTCTCTCTCCGGGGATGGGCAACGAGTTTCGCTTCGTGGACGACGCCGACCGAGACGCCGAGCGCGGCATTCCATTTCTCTCTTGGAGACTCGACGTTACGGACAGACCGAGCCTCGTTCATGATTTTACGAGATGA 723 0.5436 MMPRCCSSQGHVMGPCTCGMIHGQTNSFSMLFSMPNNHKSYGDCGDMYSFAASPSSSVDCTLSLGTPSTRLSQDEEKRKPRDHRSVSNFCWDLLQSHTKSTRGTNTSNSSNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAGAVAATTAANSSDVMDSAQMFSGHHNNSWYAHSQSQKMQFLSPGMGNEFRFVDDADRDAERGIPFLSWRLDVTDRPSLVHDFTR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0172 240 CDD ZnF_GATA 119 151 IPR000679 GO:0006355|GO:0043565
Lele51g0172 240 Pfam GATA zinc finger 120 154 IPR000679 GO:0006355|GO:0043565
Lele51g0172 240 Gene3D - 116 193 IPR013088 GO:0006355|GO:0008270
Lele51g0172 240 PANTHER GATA TRANSCRIPTION FACTOR 18 11 240 IPR044272 GO:0003700|GO:0009908
Lele51g0172 240 ProSiteProfiles GATA-type zinc finger domain profile. 114 150 IPR000679 GO:0006355|GO:0043565
Lele51g0172 240 ProSitePatterns GATA-type zinc finger domain. 120 145 IPR000679 GO:0006355|GO:0043565
Lele51g0172 240 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 117 155 - -
Lele51g0172 240 SMART GATA_3 114 168 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0172 Lele-ChrLele51 985898 986764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0172 3 240 C2C2-Gata Transcription Factor Family AT3G50870 41.584 1.45e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele51g0172 GATA 5.7e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0172 51 985898 986764 Lele53g0051 53 401003 403360 CCT
Lele51g0172 51 985898 986764 Lele54g0052 54 437381 440007 CCT
Lele51g0172 51 985898 986764 Lele55g1446 55 20668859 20671042 CCT
Lele51g0172 51 985898 986764 Lele56g1381 56 16924196 16926643 CCT
Lele49g0159 49 953883 954746 Lele51g0172 51 985898 986764 hybridization
Lele50g0176 50 1031083 1031962 Lele51g0172 51 985898 986764 hybridization