Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0160 ATGAATGTGAATTTTATCGGGCTGACCATTGCTTCACACTTGCAGTTCTCTGAACTAATACGGCCCGTTGAGGAAAGGATACACAATGTTGAGAATTTCATAAAGTCTATCAAGCCAGAACTGGAAGTGCAAGCCGAACCAATCATAGATCCCTATGGCCCTTCTATCATTGATGAAAATTTGGAGGCTATAGTTGTCAGGCGGGGTTTTGCAAAAATGAATGATCTGATGACGAAATCATTTCTAAGTTATGTTGAACTGAAGAAACAGGCCCGAAAGGACCTTGAAGCCGATCTTGACATCGAAGCAGGGCAATTCAACCCCATTGAAGACCAAAACCTCTCTCAGTTCTTTGAAGAAGTTGATGCCATCAAATGCGAAATGGAAGAGATCACCAATCTCTTATTGGATCTTCAACAACTGAATGAAGAAACAAAATCAACCCACAGTACCAAAGTTCTTCGTGGGCTCAGAGACCGAATGGAATCAGACATGGTCACCATTCTTCGCAAAGCAAATAGCATCAAGACAAGGCTTGAATCACTTGACCAATCCAACGTAAGAAATCGCAAAATATCAGAATCCTTTAAAGAAGGAACCCCAGTCGATAGAACGAGAATATCAGTCACAAGTGGCCTAAGAGTCAGGCTCAGAGACTTGATGAATGAATTTCAATCCCTGAGAAACAAGATTCTATCTGATCACAAGGAGGATTTGAAGAGAAGATACTACACTGCAACAGGGGAGATACCAAGCGATGAAATAGTGGAGAAGGTGGTTTCTGGGAGTGTCAAAGTTGATTTTTTCAAAACAGAGGCTGATAATATGACGGCTGAGACTCAGGTTAGGCACCAGGCTGTGATGGATATACAGAGGAGTTTGGATAAACTTCACAAGGTTTTTCTTGACATGGCTATTATTGTGGAGACACAAGGCGAGAAAGTGGACAACATTGAAGATAATGTAGCCAATGCTAGGAGCTTCGTTCATGGTGGGACTAAGAGTCTTGACTATGCTAATCAGATGAGGAAGAATAAAAAATGGGCATGGTGGGTTTGTACTGTGGGACTGATTATTCTTTTGGTGTGCCTAATTGCACTCTTGGCTTCTTGA 1113 0.4178 MNVNFIGLTIASHLQFSELIRPVEERIHNVENFIKSIKPELEVQAEPIIDPYGPSIIDENLEAIVVRRGFAKMNDLMTKSFLSYVELKKQARKDLEADLDIEAGQFNPIEDQNLSQFFEEVDAIKCEMEEITNLLLDLQQLNEETKSTHSTKVLRGLRDRMESDMVTILRKANSIKTRLESLDQSNVRNRKISESFKEGTPVDRTRISVTSGLRVRLRDLMNEFQSLRNKILSDHKEDLKRRYYTATGEIPSDEIVEKVVSGSVKVDFFKTEADNMTAETQVRHQAVMDIQRSLDKLHKVFLDMAIIVETQGEKVDNIEDNVANARSFVHGGTKSLDYANQMRKNKKWAWWVCTVGLIILLVCLIALLAS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0160 370 Gene3D - 110 240 - -
Lele51g0160 370 CDD SynN 114 263 IPR006011 GO:0016020
Lele51g0160 370 SMART SynN_4 109 236 IPR006011 GO:0016020
Lele51g0160 370 Coils Coil 121 148 - -
Lele51g0160 370 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 277 339 IPR000727 -
Lele51g0160 370 Gene3D - 269 369 - -
Lele51g0160 370 Gene3D HUPs 5 97 IPR014729 -
Lele51g0160 370 SUPERFAMILY t-snare proteins 112 332 IPR010989 GO:0016020|GO:0016192
Lele51g0160 370 CDD SNARE_syntaxin1-like 278 336 - -
Lele51g0160 370 SMART tSNARE_6 272 339 IPR000727 -
Lele51g0160 370 PANTHER SYNTAXIN 116 360 IPR045242 -
Lele51g0160 370 Pfam Syntaxin 116 312 IPR006011 GO:0016020
Lele51g0160 370 FunFam Syntaxin 132 270 369 - -
Lele51g0160 370 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 111 242 - -
Lele51g0160 370 Pfam SNARE domain 313 362 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0160 Lele-ChrLele51 919223 922029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0160 73 370 SNARE and Associated Proteins AT2G18260 61.238 3.75e-129 371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0146 49 888688 889716 Lele51g0160 51 919223 922029 hybridization
Lele50g0166 50 979047 981104 Lele51g0160 51 919223 922029 hybridization