Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0124 ATGGTCAACTGGAATTGGAAATCCACTTTCCGATTGATCAAACACTCGCCCAAACTATTCTGGGAACGCCGATGTATCCCTCCGGCCATAGTTTCCGGTTTCAGGGGGTTCTCCAGTGGAAGTAGCGCTCAGTTACAATGCAACATTTTTCGAGGACAGCAGAGGCTTTTCCCTATTTCCGATTACGTAGAAACAGAAGAAATTTGTATCGGAAGGCCGGGTGGAGTTCAGCGCCAATGTTATAGTTCATTAGCTGGGTTGTTTCATAGGAGCCCTCGGTTTTCAACTTTAAATGATGAGGATATTAGATATTTTGAGGGCATACTAGGGAACAAAAATGTCATCCAGGACGAGGAGAGGCTTGTTGCCGCCAATACTGATTGGATGCACAAATATAAAGGATCTAGTAAACTTCTGCTGCTGCCACGGAGCACCGAGGAGGTATCTCAGATACTAAAATACTGCAACTCTAGATGCTTAGCTGTTGTTCCGCAAGGTGGAAATACTGGTCTTGTGGGTGGAAGTGTACCTGTTTTTGATGAAGTGATTATCAATCTTAGTTTGATGAATAAAATCATATCTTTTGACAAGGTAAGTGGTATATTGGTGTGTGAAGCAGGATGCATATTGGAAAATATAATAACATTCCTGGACAATGAAGGATTTATTATGCCACTAGACTTAGGTGCCAAAGGCAGCTGCCATATTGGTGGAAATGTCTCAACTAATGCTGGTGGTTTGCGCCTTGTTCGCTATGGATCCCTTCATGGAAATGTACTTGGTCTTGAAGCTGTTCTAGCAAATGGTACTGTAATCGACATGCTTAAGACACTACGCAAAGATAACACTGGCTATGACTTGAAACATCTATTTATAGGAAGTGAAGGTTCCCTAGGAATTGTTACTAAGGTTTCCATACTTACGCCACCAAAATTATCTTCCACCAATGTGGCTTTTCTTGCTTGTAAAGATTATATCAGCATCCAGAAATTGCTACAGGAAGCAAAGAGGAGACTTGGGGAGATATTATCTGCATTTGAATTTTTAGATAACCAATCTATGAATTTGGTTTTAAATCATTTGGAAGGTGCACGGAATCCATTACCTGCATCAATGCATGACTTTTATGTTCTGATTGAGACTACAGGAAGTGATGAATCTTCTGACAAACAAAAGCTTGAAGCATTTTTACTTCACTCTATGGAAAATGAATTGATATCTGATGGCGTTCTTGCCCAAGACATAAACCAAGCCTCATCATTTTGGCATTTACGTGAGGGCATACCAGAGGCACTAACAAGAGCAGGAGCTGTTTACAAGTATGATTTATCAATACCTGTTGAAAAGATGTACATTCTTGCTAAGGAAATGCGCACTAGACTCGGGAATTTAGCTAATGTAGTAGCATACGGTCACCTAGGAGATGGTAATTTGCACTTAAATATCTCAGCTCCCCAGTATGATGATAAGATTTTATCACAAATCGAGCCTTATGTGTATGAGTGGACATCGAAGCACAATGGCAGTATAAGTGCAGAGCATGGCCTTGGATTAATGAAAGCTAATAAGATTTTCTACAGTCAGTCACATGAAACTGTGCAATTAATGGCTTCAATCAAGAATCTGCTGGACCCCAACAAAATACTCAACCCATATAAAGTTCTACCACACTCTGACGGGGAAGGCATAAATGGGTCAATTGATTTGCTAACTTCGTCAAATCTCCTTTCTCTCGTCTTTCTAAGAAAAATCATGACCAGCTCTTCCGCTGCTTCTCGCAAGGCTCTGAGTAAAATTGCCTGCAATAGGCTTCAGAAGGAACTCGTGGAGTGGCAGGTCAATCCCCCCACCGGTTTCAAGCACAAAATCACCGATAATCTCCAACGGTGGGTTATTGAAGTGACTGGAGCTCCGGGCACACTTTACGCCAATGAAACCTACCAACTTCAGGTCGACTTTCCCGAGCACTACCCCATGGAAGCTCCACAGGTTATATTCTTGCACCCTGCTCCACTGCATCCCCATATCTATAGCAATGGGCACATTTGTTTAGATATACTGTATGACTCATGGTCCCCGGCCATGACAGTTAGTTCTATCTGCATCAGCATTCTCTCAATGCTTTCAAGCTCGACTGTAAAGCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGTAGATCTCCTAAGGAGACAAGGTGGTGGTTCCATGACGATAAAATTTGTGAATTTGCTTCTGATCCAGAGTTTCAGCGATACCTTAAGGCATTGTTTGGAAATTTGAGAACCCAGAAAGCAAAACTGACCAAGCTGGATCTGTGGGTCTCTGAATTACTTGCATTTCTCCCCTCTTTGCAAAGTCTTTGGGTGGGTGCTGGGCTGGCAAACACATTTGCTGAATTAGCGAGTACATATTACAGTGACGAAGGGAAAAGAATTAGGCTGCGAATAGAAAAGAAGAGTGTTAGCCCTGTTGAGTTATTCGTCCGTTACTGCTTCAAAGTAAGGAATGCACTTTTAGTTTCTTATATGTAA 2547 0.4193 MVNWNWKSTFRLIKHSPKLFWERRCIPPAIVSGFRGFSSGSSAQLQCNIFRGQQRLFPISDYVETEEICIGRPGGVQRQCYSSLAGLFHRSPRFSTLNDEDIRYFEGILGNKNVIQDEERLVAANTDWMHKYKGSSKLLLLPRSTEEVSQILKYCNSRCLAVVPQGGNTGLVGGSVPVFDEVIINLSLMNKIISFDKVSGILVCEAGCILENIITFLDNEGFIMPLDLGAKGSCHIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGTVIDMLKTLRKDNTGYDLKHLFIGSEGSLGIVTKVSILTPPKLSSTNVAFLACKDYISIQKLLQEAKRRLGEILSAFEFLDNQSMNLVLNHLEGARNPLPASMHDFYVLIETTGSDESSDKQKLEAFLLHSMENELISDGVLAQDINQASSFWHLREGIPEALTRAGAVYKYDLSIPVEKMYILAKEMRTRLGNLANVVAYGHLGDGNLHLNISAPQYDDKILSQIEPYVYEWTSKHNGSISAEHGLGLMKANKIFYSQSHETVQLMASIKNLLDPNKILNPYKVLPHSDGEGINGSIDLLTSSNLLSLVFLRKIMTSSSAASRKALSKIACNRLQKELVEWQVNPPTGFKHKITDNLQRWVIEVTGAPGTLYANETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKICEFASDPEFQRYLKALFGNLRTQKAKLTKLDLWVSELLAFLPSLQSLWVGAGLANTFAELASTYYSDEGKRIRLRIEKKSVSPVELFVRYCFKVRNALLVSYM 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0124 848 FunFam D-2-hydroxyglutarate dehydrogenase mitochondrial 312 434 - -
Lele51g0124 848 SUPERFAMILY FAD-linked oxidases, C-terminal domain 285 557 IPR016164 GO:0003824|GO:0050660
Lele51g0124 848 Gene3D - 313 434 - -
Lele51g0124 848 FunFam D-2-hydroxyglutarate dehydrogenase, mitochondrial 190 310 - -
Lele51g0124 848 Gene3D Ubiquitin Conjugating Enzyme 599 745 IPR016135 -
Lele51g0124 848 SUPERFAMILY FAD-binding/transporter-associated domain-like 100 310 IPR036318 GO:0050660
Lele51g0124 848 Gene3D - 436 514 - -
Lele51g0124 848 Pfam FAD binding domain 138 273 IPR006094 GO:0050660
Lele51g0124 848 FunFam D-lactate dehydrogenase mitochondrial 515 555 - -
Lele51g0124 848 ProSiteProfiles PCMH-type FAD-binding domain profile. 132 311 IPR016166 GO:0071949
Lele51g0124 848 FunFam D-2-hydroxyglutarate dehydrogenase mitochondrial 436 514 - -
Lele51g0124 848 PANTHER D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL 86 558 - -
Lele51g0124 848 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 672 687 IPR023313 -
Lele51g0124 848 Pfam FAD linked oxidases, C-terminal domain 314 554 IPR004113 GO:0003824|GO:0050660
Lele51g0124 848 SMART ubc_7 602 745 - -
Lele51g0124 848 FunFam probable ubiquitin-conjugating enzyme E2 16 597 745 - -
Lele51g0124 848 SUPERFAMILY UBC-like 590 710 IPR016135 -
Lele51g0124 848 FunFam D-2-hydroxyglutarate dehydrogenase, mitochondrial 88 187 - -
Lele51g0124 848 Gene3D - 89 187 IPR016167 -
Lele51g0124 848 Gene3D - 190 311 IPR016169 -
Lele51g0124 848 CDD UBCc 601 701 IPR000608 -
Lele51g0124 848 Gene3D - 515 555 IPR016171 -
Lele51g0124 848 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 599 754 IPR000608 -
Lele51g0124 848 Pfam Ubiquitin-conjugating enzyme 603 738 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0124 Lele-ChrLele51 727172 740521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0124 559 696 Miscellaneous Gene Families AT2G33770 24.503 7.05e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0124 51 727172 740521 Lele54g0545 54 11893061 11894809 CCT
Lele51g0124 51 727172 740521 Lele56g0889 56 7479772 7481399 CCT
Lele49g0116 49 711279 714318 Lele51g0124 51 727172 740521 hybridization
Lele50g0129 50 789697 796349 Lele51g0124 51 727172 740521 hybridization