Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele51g0121 | ATGGACGCTTTTAGCCCTCATTCAATGCTTTACCAAACTCACCCCCATCTTCTCTTTCACTTCCCTCTCTTCCCTCCTTCCATTTCTCACCCTCCAACTCCAACTCCAACTCCAACTCCCTCTTCTCATCTCTCTCTTCTTCAGGCCGAAACCCAAATGGAGTTCGTGGAAGCGGCGTTTAAGACCAGTTTTACGAAAGGCGCCGTCGTGAAACTTCAACCCCCGCCTTCTGTGGATGACTCGCCCGCCTTCAATGTCGCAAATGGCGCCCCTTCCGACGACTTCTCCGTCGACGAACTCCTCGACTTTTCTCACCTGGAAGAGCCTGTCGAAGATGAACATTACCACAAGCCTGACTCTGCTTCTGTTTCCCCTCCACCAGTGGACCCAAGTGATGAAATTTCTCACTTTACCCTCCCTGGTTCTGTCAAAGACTACGTCGACTCCTTGTCGTCTGGTGAACTCAGCGTTCCGGCGGATGATTTGGCAAACTTAGAGTGGTTGTCTCATTTTGTCGAAGATTCCTTCTCGGTGTATTCCTTTGCTTATCCCGCCGGAACTCTGATGGGAAAACCCAAGAGCCATGCCGAGCAAACGCCCGAACCAGACGGCCATCTTTCGACTCATTCCTGTTTTAAGACTCCGGTCCCGGCTAAGGCCAGAAGCAAGAGAACGAGAACCGGAGTTGGGGTCTGGCCTTTCAGGTCTCCATCCTTGACCGAATCATCCTCAAGCTCCACCTCATCTTCCTCCTCCTCGTCCCCCACAAGCCCCGGGTTAATTTCCGCCAGCGTAGCGCTCGAGAAAGTTTGGTCCGAGGCCAAGCCACCGGAGAAGAGACCAAAGAAGAAGCCGGCGCCGGAGGCTGCTGCGGGGACCGGCGGAACAGCGCAGACGCCGCGCCGGTGCACCCATTGCGGGGTGCACAGGACGCCGCAGTGGCGAGCCGGTCCGCTGGGAGCGAAAACCCTGTGCAACGCATGTGGGGTCCGATACAAGTCGGGACGGCTTTTACCGGAATACAGGCCAGCCTGCAGCCCGACGTTCTCGAGCGAACTGCACTCAAACCACCACCGAAAAGTGCTGGAGATGCGGCGGAACAAGGAGGGACTGTGCGGAGACGAGGCCAGTTTGGGCGAGTCCCCGACTCCGGCGGTTTCGAGTTTTTGA | 1170 | 0.5632 | MDAFSPHSMLYQTHPHLLFHFPLFPPSISHPPTPTPTPTPSSHLSLLQAETQMEFVEAAFKTSFTKGAVVKLQPPPSVDDSPAFNVANGAPSDDFSVDELLDFSHLEEPVEDEHYHKPDSASVSPPPVDPSDEISHFTLPGSVKDYVDSLSSGELSVPADDLANLEWLSHFVEDSFSVYSFAYPAGTLMGKPKSHAEQTPEPDGHLSTHSCFKTPVPAKARSKRTRTGVGVWPFRSPSLTESSSSSTSSSSSSSPTSPGLISASVALEKVWSEAKPPEKRPKKKPAPEAAAGTGGTAQTPRRCTHCGVHRTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRNKEGLCGDEASLGESPTPAVSSF | 389 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele51g0121 | 389 | ProSiteProfiles | GATA-type zinc finger domain profile. | 297 | 333 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele51g0121 | 389 | SMART | GATA_3 | 297 | 351 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele51g0121 | 389 | PANTHER | GATA TRANSCRIPTION FACTOR | 88 | 369 | - | - | |
| Lele51g0121 | 389 | ProSitePatterns | GATA-type zinc finger domain. | 303 | 328 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele51g0121 | 389 | MobiDBLite | consensus disorder prediction | 273 | 303 | - | - | |
| Lele51g0121 | 389 | Pfam | GATA zinc finger | 303 | 337 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele51g0121 | 389 | FunFam | GATA transcription factor | 294 | 377 | - | - | |
| Lele51g0121 | 389 | MobiDBLite | consensus disorder prediction | 236 | 260 | - | - | |
| Lele51g0121 | 389 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 299 | 360 | - | - | |
| Lele51g0121 | 389 | CDD | ZnF_GATA | 302 | 350 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele51g0121 | 389 | MobiDBLite | consensus disorder prediction | 190 | 260 | - | - | |
| Lele51g0121 | 389 | Gene3D | - | 294 | 370 | IPR013088 | GO:0006355|GO:0008270 | |
| Lele51g0121 | 389 | MobiDBLite | consensus disorder prediction | 110 | 136 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele51g0121 | Lele-ChrLele51 | 709316 | 710682 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele51g0121 | 57 | 380 | C2C2-Gata Transcription Factor Family | AT5G66320 | 49.847 | 3.64e-78 | 243 |
Transcription factors information