Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0118 ATGGATAAGCCTCACCACCACCTCCAGGCTTCCCCCATGGACAAGCCTTCCCTTCCCGATGCTCAGAGACCCGCCTTTGACCGTTCTGACCCGACTCTCCACTTGATGACCGTCGATCCCTGCCGGACCGCCGGGGATGCCCAGGATTCCCAGCTCCTCCCCGCTCCGGTCCCACTTGCCCGCGATGCTGATGTGCCCGCGACGCAGCATGGTTGCTTGCCCAACATGGAACTCAAGGTTGATGTTAAGGTTGCGGACGGCGGCTTGGGGAAAAGGAAGCGGGGTCGGCCGGCCAGGGGTACTGCCAGGGAACCGCCATTGAAGAAGAATAGGGACGATGAGGACGTCTGTTTCATTTGTTTCGATGGTGGGAGCCTTGTTCTCTGTGATCGCCGGGGTTGTCCTAAAGCATACCATCCCGCATGTATTAAGCGAGACGAGGCATTCTTTCGTTCCAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCGTTTGTCGGAAGGCATCCCATTATATGTGCTATACGTGTACATATTCTTTGTGCAAGGGTTGTATAAAAGGCGCCGATTATCTCTGTGTCAGAGGGAATAAAGGTCTGTGTGGGATATGCATGAGGACTATAATGCTCATTGAGAACAGTGCGCAGGGAAACAATGAAATGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGTTGTACTTGAAAGAGAAGCTATCTTTAACATTAGATGAGATCCTTCGAGTTAAAACCCCATGGAAAGGAGCTGCTGCTAATGGTTCTAATTTAGAAATGCCTCATGAAATTCATATCCATAAAGATGACAAGGGTTCCGGATCAGAGAACTCCTGTATAGACATAGAATCAAATAATTTAGAAAATAACCATTCTAATAGACAGCCAAGGCTTCTTAATAAGGAGAGCTGCCCAAATATGAACACTTCAGCCAGTGACAAAGATGCATCTATGGCTGAACGCACAAAATGGGCTTCAAAGGAGCTTTTAGAGTTTGTTGCAAATATGAAAAATGGGGATGCATCTTTTCTATCTCAACGTGATGTCGAGGCTCTTTTGCTGGAGTATATAAAGAAAAACAATCTTTGTGATCCTCAACAGAAAAGCCAAATTGTTTGTGATTCAAGGCTAGTCAATTTGTTCAGAAAAGAGCGTTTAGGTCACATGGAAATGTTCAAGCTTCTTGAATCTCATCTTATTATAAAAGATGATGCCTCTGCCAATATTATATTGTCAGTACCGATTGATGATGTTGCTAGTCAGATGGAGGTTAATGACAATGATAATAATCAGCCAATTGTGGCGAATGATAAGAGACAGAAAACACGTAGAAGGGCTGAAGTGCTGCTTGATAATCCGGACGCATATGCTGCAATAAATGCTCACAACATTAACTTGATTTACTTGCGGCGTAATCAGATGGAGAATATAATTGAAGATGCTGAGAACTTCAAGGACAAGGTTGTTGGTTCAATTGTGCGGATAAGAATCTCCAGCCGTGATCAAAAGCAAGAGATGTATAGGCTTGTACATGTTATAGGTACCGGCAATATTGCTGAATCTTACAATATTGGCTCAAGAACAACAGGCATTGTGCTTGAAATTTCTAATTTAAACAAGAAAGAGGTCATAAAGATAAGTGAGATTTCAGATCAGGCTTTCTCTGAGGATGATTGCAAACGGTTGCGCCAGAGCATAAAATATGGGTTTTCAAAAAGATTGACCGTGGGAGAGATTCTGGACAAGGCATTGACAATTCAAGCAATTAGAGTTAATGATTTGCTGGAAGACGAGATACTGCAGCTTAACCATCTTAGGGATAGAGCAAAGTGTGTGGAGAAGTTGCAGTTACTGAACTCACCTGAGGAACGACAGCAAAGGCAGCAAGAAATTCCAAAAGTATACTCTGATCCAAATATGGATTCAATGTTTGACTCTGATGAAGACGCTGAAAAGTCAGATGAAAGGAAGCAAGTTATCTGGACAATATTCGACGGTGAATGTGGTTATGTCAATGTAGATGACAATATACAGTCTAAAAATTCTGGATTTAATAGAAGAGAGAGGGAGCCTAGTTCTCCAAGAAGTCAGCATGGTGTCCTAAATGATGTTGGATGCAGAGCACTGGACTTTTTGGTCACTGCTCATGAGCAGATTGGGAATACATGTACAATGAAGAACCAAAACAGCCCAAATGATGCAGCACATGGTGATAGCAATAATTTAGTAGTGTCAACGTCAGGGACATCTTGTGTTGCATCAGACCCTCCATCTTTGCCTTTCTCTACAGGAAAAGAGCCGCCATTTAATGATCTTGCAACTGATAATCTATGGCACTACCGGGATCCATCTGGGAAGATTCAAGGACCATTTTCTTTGCTGATGTTGTATAAGTGGAATGCAAGCGGGCTTTTCCCTCCTGATTTCAGAATATGGAAGAACACTGAAAACCAAGATGACTCTATATTGTTAACTGATGTATTAAGTGGGAAGTGTACTAAAAATGAGTCATTGCCATGCAGTAGCCAGCTACTATCTTTAGGGATCAGTGCTGCACGGGGCGACGAAGATGATATTGATTTGCCAAGTTGCGCTCCTGTAACCAGTTCCTCAACTTGCATAGATTCTACATCTACTATTGTTCCTGCAACAAAAACATCACCAAAAAACTCACACATTGGTTTTCTGGAATTGCCTGGTGAAAACTCTAAGACAACTCATTCTGAGCATAAGGGTCAGTCTGCTGAAAATAAACATTCCTGGAGTACTGCTTCCAGCTTAGTTGGTGGTGGGACACCACTCCCTGAAGTGACTGTTGAGTGGAGAAGATGTTCACCAGCTCCGCCTAATCCTTCTGTTGAGGAATGGGACTCCAATCTTGTCTCTGCATCTTCATTGAAGCCAGCTGAAACTGGTGGCGATTGTACTGCTACTCCATCTTCAATATGTGATCAACTTAAACATTCTTCCCCTTCCAATCCAGCCTGTAATACATCTACGTGGCAGGCAATTATTGATGAACAGAATGATTTTGGCTCATTTGATGAAACAGTTTCAGATCTGTTGGCAGAAATGGAGGCAATGGGGTCTCTTGGTGGCTTGGAATCTCCCACATCGATCATGAAATGTGGTGAGGAATTGACTGAGGGTTCTAATTGTCTCAGCCCTGCAGAGGGGCTCAGCCCAATGCCCGATGCAGGTAAAGGCGATGCACTGAGCTCCACGGGAGATTTACAATTTCCCTCTCAATCCACAGCACCTGAGGTACCATTATGCCAACCAGATGTACATTACCATGAAAGAATCTCTGGAGGGCATTCTGGCAGAAGTTCTGAAGTAGCTGGCACAAAAAATAGTGTTTCAGGGAATCAATGGAAGTCAGGTTCAGGAATTCCATCCACAGCAACCTGGGCCATGCCTACAGATACTACTTGGAGACTCGGGCAAGACAGCAGAAGTGGTTGGGAGGCATCTCAGGTAAATACCAGCTTGGGCTGGGGTGGAATGGATAATAAAGGAAATGCAAACACAAGTTGCGGTGTAGGACAGGGGGCAGTGCAGGAAAACAGGAACATAAATCCATACACTTCCGTAGGAACTCCAGCCGTTTATGGGAACCAATCTAGATATGGCAGCGATCGATTTTCTCCTCGTGGTAGGGATATGAATTCTGGTAGGGGTAGACACGTCTGGAACAGGCAACCATATGGTGGTGGAAATGGAGGCTCCCAAAGGCATCCGCCCAGAGGGCAGCGAATTTGTAAATTTTACGAAAGTGGGTACTGTAAGAAGGGAGCATCATGTGATTACTTGCACCCATGA 3861 0.4426 MDKPHHHLQASPMDKPSLPDAQRPAFDRSDPTLHLMTVDPCRTAGDAQDSQLLPAPVPLARDADVPATQHGCLPNMELKVDVKVADGGLGKRKRGRPARGTAREPPLKKNRDDEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSVCRKASHYMCYTCTYSLCKGCIKGADYLCVRGNKGLCGICMRTIMLIENSAQGNNEMCEVDFDDKSSWEYLFKVYWLYLKEKLSLTLDEILRVKTPWKGAAANGSNLEMPHEIHIHKDDKGSGSENSCIDIESNNLENNHSNRQPRLLNKESCPNMNTSASDKDASMAERTKWASKELLEFVANMKNGDASFLSQRDVEALLLEYIKKNNLCDPQQKSQIVCDSRLVNLFRKERLGHMEMFKLLESHLIIKDDASANIILSVPIDDVASQMEVNDNDNNQPIVANDKRQKTRRRAEVLLDNPDAYAAINAHNINLIYLRRNQMENIIEDAENFKDKVVGSIVRIRISSRDQKQEMYRLVHVIGTGNIAESYNIGSRTTGIVLEISNLNKKEVIKISEISDQAFSEDDCKRLRQSIKYGFSKRLTVGEILDKALTIQAIRVNDLLEDEILQLNHLRDRAKCVEKLQLLNSPEERQQRQQEIPKVYSDPNMDSMFDSDEDAEKSDERKQVIWTIFDGECGYVNVDDNIQSKNSGFNRREREPSSPRSQHGVLNDVGCRALDFLVTAHEQIGNTCTMKNQNSPNDAAHGDSNNLVVSTSGTSCVASDPPSLPFSTGKEPPFNDLATDNLWHYRDPSGKIQGPFSLLMLYKWNASGLFPPDFRIWKNTENQDDSILLTDVLSGKCTKNESLPCSSQLLSLGISAARGDEDDIDLPSCAPVTSSSTCIDSTSTIVPATKTSPKNSHIGFLELPGENSKTTHSEHKGQSAENKHSWSTASSLVGGGTPLPEVTVEWRRCSPAPPNPSVEEWDSNLVSASSLKPAETGGDCTATPSSICDQLKHSSPSNPACNTSTWQAIIDEQNDFGSFDETVSDLLAEMEAMGSLGGLESPTSIMKCGEELTEGSNCLSPAEGLSPMPDAGKGDALSSTGDLQFPSQSTAPEVPLCQPDVHYHERISGGHSGRSSEVAGTKNSVSGNQWKSGSGIPSTATWAMPTDTTWRLGQDSRSGWEASQVNTSLGWGGMDNKGNANTSCGVGQGAVQENRNINPYTSVGTPAVYGNQSRYGSDRFSPRGRDMNSGRGRHVWNRQPYGGGNGGSQRHPPRGQRICKFYESGYCKKGASCDYLHP 1286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0118 1286 MobiDBLite consensus disorder prediction 1204 1263 - -
Lele51g0118 1286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 204 IPR013083 -
Lele51g0118 1286 Gene3D SWIB/MDM2 domain 323 421 IPR036885 -
Lele51g0118 1286 CDD SWIB-MDM2_like 337 412 - -
Lele51g0118 1286 MobiDBLite consensus disorder prediction 692 713 - -
Lele51g0118 1286 Gene3D - 472 601 IPR036128 GO:0003677
Lele51g0118 1286 MobiDBLite consensus disorder prediction 1122 1150 - -
Lele51g0118 1286 ProSiteProfiles Zinc finger PHD-type profile. 114 180 IPR019787 -
Lele51g0118 1286 SUPERFAMILY SWIB/MDM2 domain 335 413 IPR036885 -
Lele51g0118 1286 Gene3D - 790 846 IPR035445 -
Lele51g0118 1286 SUPERFAMILY CCCH zinc finger 1261 1285 IPR036855 GO:0046872
Lele51g0118 1286 SMART gyf_5 789 844 IPR003169 GO:0005515
Lele51g0118 1286 MobiDBLite consensus disorder prediction 280 331 - -
Lele51g0118 1286 MobiDBLite consensus disorder prediction 912 944 - -
Lele51g0118 1286 FunFam Zinc finger CCCH domain-containing protein 19 106 206 - -
Lele51g0118 1286 ProSiteProfiles Plus3 domain profile. 471 604 IPR004343 GO:0003677
Lele51g0118 1286 CDD PHD5_NSD 116 161 - -
Lele51g0118 1286 ProSiteProfiles GYF domain profile. 788 842 IPR003169 GO:0005515
Lele51g0118 1286 Pfam GYF domain 791 831 IPR003169 GO:0005515
Lele51g0118 1286 SUPERFAMILY GYF domain 787 841 IPR035445 -
Lele51g0118 1286 SMART rtf1 471 581 IPR004343 GO:0003677
Lele51g0118 1286 MobiDBLite consensus disorder prediction 1204 1226 - -
Lele51g0118 1286 Pfam Plus-3 domain 476 579 IPR004343 GO:0003677
Lele51g0118 1286 SMART PHD_3 116 162 IPR001965 -
Lele51g0118 1286 MobiDBLite consensus disorder prediction 1 33 - -
Lele51g0118 1286 MobiDBLite consensus disorder prediction 634 667 - -
Lele51g0118 1286 SMART swib_2 332 417 IPR019835 -
Lele51g0118 1286 MobiDBLite consensus disorder prediction 290 328 - -
Lele51g0118 1286 MobiDBLite consensus disorder prediction 1113 1150 - -
Lele51g0118 1286 MobiDBLite consensus disorder prediction 634 648 - -
Lele51g0118 1286 SUPERFAMILY FYVE/PHD zinc finger 112 168 IPR011011 -
Lele51g0118 1286 Pfam SWIB/MDM2 domain 339 412 IPR003121 -
Lele51g0118 1286 ProSiteProfiles SWIB/MDM2 domain profile. 331 414 IPR003121 -
Lele51g0118 1286 ProSitePatterns Zinc finger PHD-type signature. 117 177 IPR019786 -
Lele51g0118 1286 SUPERFAMILY Plus3-like 472 600 IPR036128 GO:0003677
Lele51g0118 1286 MobiDBLite consensus disorder prediction 88 110 - -
Lele51g0118 1286 ProSiteProfiles Zinc finger C3H1-type profile. 1261 1286 IPR000571 GO:0046872
Lele51g0118 1286 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 879 1286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0118 Lele-ChrLele51 683229 689267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0118 113 194 PHD Transcription Factor Family AT4G14920 34.146 5.87e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lele51g0118 Plus-3 2.2e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0118 51 683229 689267 Lele56g1414 56 17185946 17192942 CCT
Lele49g0105 49 658380 664415 Lele51g0118 51 683229 689267 hybridization
Lele50g0122 50 738927 747040 Lele51g0118 51 683229 689267 hybridization