Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0116 ATGCGAACGCTTTGCGACGCTTGTGAGAGCGCTGCCGCCATCGTATTCTGCGCCGCCGATGAGGCCGCGCTCTGCCGTGCCTGCGACGAAAAGGTTCACATGTGTAATAAGCTAGCTAGCCGGCATATCAGGGTTGGCCTTGCCAGTCCAAGTGATGTGCCACGCTGTGACATTTGTGAAAATGCACCTGCTTTCTTCTATTGCGAGACAGATGGAACTTCTCTGTGTCTGCAATGTGACATGATAGTTCATGTTGGAGGCAAAAGAACACATGGAAGATATCTTCTTTTCAGGCAGCGGGTTGAATTTCCAGGAGACAAACCTGGTCTCGCAGAAACCCCGGCTTCACAGCATCTGGATGTGGTTGAGACCAAACGAGGCCAAAATTCATTGCTTAAAATAAAAATGGGAGAGAAACAACAGAATCACGGGATGCCAACCCCAGAACATGATGCTGATGGGCATGCCAAGATGGATGCTAAAATGATTGATCTGAACATGAAGCCTCAAAGAATACATGAACACGGGGGTTGGGGCGTCAAGCCGAGCGGTCATTTCGCCTCTGTAAGAATTCAATTTGATAGCTCAACACCATCACATCTGTAA 606 0.4868 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHIRVGLASPSDVPRCDICENAPAFFYCETDGTSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPGLAETPASQHLDVVETKRGQNSLLKIKMGEKQQNHGMPTPEHDADGHAKMDAKMIDLNMKPQRIHEHGGWGVKPSGHFASVRIQFDSSTPSHL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0116 201 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele51g0116 201 FunFam B-box zinc finger protein 19 2 92 - -
Lele51g0116 201 Gene3D Classic Zinc Finger 2 91 - -
Lele51g0116 201 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 147 - -
Lele51g0116 201 SMART bboxneu5 51 96 IPR000315 GO:0008270
Lele51g0116 201 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lele51g0116 201 CDD Bbox1_BBX-like 56 96 - -
Lele51g0116 201 CDD Bbox1_BBX-like 4 47 - -
Lele51g0116 201 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Lele51g0116 201 Pfam B-box zinc finger 3 34 IPR000315 GO:0008270
Lele51g0116 201 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Lele51g0116 201 SUPERFAMILY B-box zinc-binding domain 48 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0116 Lele-ChrLele51 669438 671692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0116 1 174 C2C2-CO-like Transcription Factor Family AT4G38960 62.644 3.68e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lele51g0116 zf-B_box 1.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0103 49 640654 641822 Lele51g0116 51 669438 671692 hybridization