Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0108 ATGTTGTCCGTCGGAGAAGGTGATCAGCCTGCAGAGGAGCCTAAGCCAGTGACCAAGGAGAAGAAGCCCAAGGTTCCGAAGGAGAAGAAGGCAAGGCAGCCGAAAATGGTTTCTCATCCTCCATATTTTCAGATGATTGAGGAGGCTTTATTGGCTCTGAACGAGAAGGGTGGCTCCAGCCCGTACGCCATAGCCAAGTACATGGAGGAGAAGCATAAATCGGTTCTTCCTGGGAATTTCAGGAAGATGTTGGCTCTTCAGCTGAAGAACCAAGCTGCGAGGGGGAAGCTCATCAAGATCAAGGCTTCCTACAAGCTGTCCGCTGAGGCGAGCAAGAAGGGCAGGGGTACCACTGGCAAGGTCACAAGGTCCGCCACACAGAAGACTCGGCGCTCTAAGCGAAGCGCGCCTAAGAAAACTGAGACAGGTAAGAAGGGTAAGAAGGCGGCGAGGAAGGTGGTGGGGGTGAAGAAGACGAAGAAATCATCCACAACTGCGAAGCCGAAGCAGCCCAAGTCTCTGAGATCTTCATCCAAGAGGACCAGAAGAGTTACTGCCTCGGCTTCATGA 570 0.5298 MLSVGEGDQPAEEPKPVTKEKKPKVPKEKKARQPKMVSHPPYFQMIEEALLALNEKGGSSPYAIAKYMEEKHKSVLPGNFRKMLALQLKNQAARGKLIKIKASYKLSAEASKKGRGTTGKVTRSATQKTRRSKRSAPKKTETGKKGKKAARKVVGVKKTKKSSTTAKPKQPKSLRSSSKRTRRVTASAS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0108 189 CDD H15 38 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele51g0108 189 MobiDBLite consensus disorder prediction 1 40 - -
Lele51g0108 189 PRINTS Histone H5 signature 52 69 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele51g0108 189 PRINTS Histone H5 signature 160 177 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele51g0108 189 PRINTS Histone H5 signature 126 140 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele51g0108 189 PRINTS Histone H5 signature 25 46 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele51g0108 189 MobiDBLite consensus disorder prediction 126 165 - -
Lele51g0108 189 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 38 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele51g0108 189 SMART h15plus2 36 103 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele51g0108 189 MobiDBLite consensus disorder prediction 103 189 - -
Lele51g0108 189 Pfam linker histone H1 and H5 family 39 105 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele51g0108 189 Gene3D - 35 127 IPR036388 -
Lele51g0108 189 PANTHER HISTONE H1 14 172 - -
Lele51g0108 189 SUPERFAMILY "Winged helix" DNA-binding domain 37 115 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0108 Lele-ChrLele51 622791 623456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0108 40 106 Single Myb Histone (SMH) Gene Family AT1G72740 40.299 1.09e-07 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0108 51 622791 623456 Lele53g0008 53 125818 126925 CCT
Lele51g0108 51 622791 623456 Lele54g0007 54 146282 147612 CCT
Lele51g0108 51 622791 623456 Lele55g1485 55 20964075 20965488 CCT
Lele51g0108 51 622791 623456 Lele56g1416 56 17203362 17204673 CCT
Lele49g0097 49 595817 596472 Lele51g0108 51 622791 623456 hybridization
Lele50g0114 50 684980 685644 Lele51g0108 51 622791 623456 hybridization