Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0107 ATGCGAACTAGAAACGCTGCTTCTTCCAAATCAGCGGCAGCTAAGAAGACACCGCCGACGAGGAAATCCGCATCTAAAAGCCCGGCGATCGCCCAATCCCCCCAGACCAAGCGCACCTCTACGATCAAAACTAGGCAGGCAAAGAAGAACGAGGCCTCGCCCTTACAAAACACGAGGTTTGATGAGGAACCGGAGCAGTCATCTGAGGAGGTAAAAGAAGCGGTTGATGCTTCTCCGATGACACCAGAGACAAAAGTTGTTACAGCTGCAAAGTCAACACCAAAGAGAGCAGTGGGAAGACCTAGGAATTCAACTAAAGCTGTTACGACCCAGGAGCAGGAAGAACAAGTGGAGGCAATAACTGATGAAACACCGAAAGTGGATAATATTGAAGTAGCTGAGAAATTGGAGGATCCTCTAAATGTTGAGGTCGTCAAAGCAGATGAAATTGAAAATAAAGAAGTGGGGGAAAAAGGTGTTGAGTTTGTTAGACAATCTGCAGGGAATGAACAACATCCCAAGGAAGGGGATGGGTGTAATGCTGATAGTGCTTGTGAATCAGCAGAGAAGAAAAGAGACATAGTTGAAGCTGTAGTCTCTGCCTCCCAAGGTGTCCCTATTTTATTGAATCAAGAAGAACATACCATGGTGGAGCTCTCTAAATCTCTGGAGAATGAAGAACCCACTGATGCAAACGAAGGAGAACAAACAAATGAAGAGGATGGGGAAAAAGCATCAGAAAAATCAACGAAAGAACAGACAGCTAATATTGTACATAAAGAGCAATTTAATGCTGATTCTGTCAGTATAGAAATGAAAGACCAAGGAGAGCAGGTGAAGGAAGAGGATGGAGAAAAAGAATCAGAAAAATCAATGGAAAAGGAGGGAGAAAAAGCCTTAGAGAAATCCATGCAAGAGGAGACAAGTAATATTATGCATAACCAGGAATCTAACCCTGATTCTGTTGAGAAAGAACTGACAAATCAATTTCTGCAAAATGATGTTAAACCTGAAAAGGCTGATCCAGAGGAGCCTCTTGAAGAAGCTGAGACATTGGATGAGGAACACAAGGAATTGTCAACTATTGCAAAGGAGCGCAAGATTAAGAAAGAGAATGAAATATTTGTTGGCGGGCTTGATCGTGATGCTACAGAGGAAGATCTTATAAAGGTTTTCGAGAAGATTGGGGAGAGAGTTGAAGTCAGGTTGCATAAAAATTCTTCAACAAACAAAAATAAGGGCTATGCATATGTAAAATTTTCTTGCAAGGAACACGCAAAGAAAGCTTTGTCAGAAATGAAAAACCCTGTTATGCGTGGTAAGCGATGTGGCACTGCACCCAGTGAGGATAATGACATATTATTCTTAGGAAATATATGCAATACATGGACAAAAGAAGCTATCAAACAGAAGTTGAAGGACTATGGTGTTGAGGGTGTTGAAAACATTACACTCGTCCCAGATGTTCACCATGAAGGACTAAGCCGGGGCTTTGCATTCCTTGAGTTCTCCTGTCATCATGATGCCATGCTTGCCTATAAGAGGCTTCAAAAGCCTGATGTAATCTTTGGACATGCTGAGCGAACCGTCAAAGTAGCCTTTGCAGAGCCTGTACGGGAGCTGGATCCAGAGATTATGGCACAGGTGAAGTCCGTTTTTGTTGATGGTCTCCTTCCTCATTGGGATGAGGGCTGCATTAGGGAGCACCTTAAAGGTTATGGTGAAATTGTACGAATTGTACTTGCCCGGAATATGACCACTGCTAAGAGGAAAGATTTTGGATTTGTTGATTTCTCTACACATGAAGCCGCTGTAGCTTGTGTTGTTGGTGTAAATAGTTCAGAATTTGTTGATGGAACGCAAAAGACAAAAGTGAGGGCTAGACTTTCAAATCCTTTGCCTAAAACACAGGCTGTCAAGGGAGGCATGTGTGGTGGGTTCCGAATTGGTCATGCTCGGGGTGGAACCTTTCCAAGATCTGCAAGGGGTTCTGGTCGTGGAGGACATGCTGTCAACTTGGGAAATTTCAACAGGGATAGAAATTTTTATCATGGAGGACACGGTCAAATTGGAAGAATGGGTTTCAGGAATGATCCTAATCTTAATAATGCTTATCCAGATTTTCATCAGAGGCAATTCGGTGAAAGGATGATTCCTTTGAGGGGTGGACATTATGCAGGTGCACAAGGTGCTGCAGTTGCTGGTCCATCTAGGCCTCATCTTGATAGAGCATGGTATGGCACCCCTGAGAGAGGCCATGGTGAACCTATTCCCCCAAGGATGCCTTTCTCCCCTGAAGGACAGTTTGACAGGCCTTTTATGGGAAGGCATATTGATGATCCATATCTTTATGAAGACAGTGTGCGTGGGGTAAAGCGGCCATATTATATGACTGACCCAGATCCTAATTACATGGGGCCTGTTAGACTTCGTCCTCGACTGGATTATGCAGATCCTGCTGTATTTCATGGCAGTCGTTACCATGATTCTATTGCAGCTGGCAGGAGACAGTACTCACATGATTATTATGGTGCTGATTATGGTGGAGGTCCATATTCATCTTTTTATGGGGGTGATAACTCATATGAGCGAAGATACTACTACTAG 2607 0.4357 MRTRNAASSKSAAAKKTPPTRKSASKSPAIAQSPQTKRTSTIKTRQAKKNEASPLQNTRFDEEPEQSSEEVKEAVDASPMTPETKVVTAAKSTPKRAVGRPRNSTKAVTTQEQEEQVEAITDETPKVDNIEVAEKLEDPLNVEVVKADEIENKEVGEKGVEFVRQSAGNEQHPKEGDGCNADSACESAEKKRDIVEAVVSASQGVPILLNQEEHTMVELSKSLENEEPTDANEGEQTNEEDGEKASEKSTKEQTANIVHKEQFNADSVSIEMKDQGEQVKEEDGEKESEKSMEKEGEKALEKSMQEETSNIMHNQESNPDSVEKELTNQFLQNDVKPEKADPEEPLEEAETLDEEHKELSTIAKERKIKKENEIFVGGLDRDATEEDLIKVFEKIGERVEVRLHKNSSTNKNKGYAYVKFSCKEHAKKALSEMKNPVMRGKRCGTAPSEDNDILFLGNICNTWTKEAIKQKLKDYGVEGVENITLVPDVHHEGLSRGFAFLEFSCHHDAMLAYKRLQKPDVIFGHAERTVKVAFAEPVRELDPEIMAQVKSVFVDGLLPHWDEGCIREHLKGYGEIVRIVLARNMTTAKRKDFGFVDFSTHEAAVACVVGVNSSEFVDGTQKTKVRARLSNPLPKTQAVKGGMCGGFRIGHARGGTFPRSARGSGRGGHAVNLGNFNRDRNFYHGGHGQIGRMGFRNDPNLNNAYPDFHQRQFGERMIPLRGGHYAGAQGAAVAGPSRPHLDRAWYGTPERGHGEPIPPRMPFSPEGQFDRPFMGRHIDDPYLYEDSVRGVKRPYYMTDPDPNYMGPVRLRPRLDYADPAVFHGSRYHDSIAAGRRQYSHDYYGADYGGGPYSSFYGGDNSYERRYYY 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0107 868 SUPERFAMILY RNA-binding domain, RBD 368 443 IPR035979 GO:0003676
Lele51g0107 868 CDD RRM_SF 454 532 - -
Lele51g0107 868 CDD RRM_SF 552 616 - -
Lele51g0107 868 MobiDBLite consensus disorder prediction 238 255 - -
Lele51g0107 868 MobiDBLite consensus disorder prediction 212 356 - -
Lele51g0107 868 Gene3D - 541 692 IPR012677 -
Lele51g0107 868 Gene3D - 341 451 IPR012677 -
Lele51g0107 868 SMART rrm1_1 453 533 IPR000504 GO:0003723
Lele51g0107 868 SMART rrm1_1 373 446 IPR000504 GO:0003723
Lele51g0107 868 SMART rrm1_1 551 626 IPR000504 GO:0003723
Lele51g0107 868 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 550 632 IPR000504 GO:0003723
Lele51g0107 868 MobiDBLite consensus disorder prediction 1 54 - -
Lele51g0107 868 FunFam Heterogeneous nuclear ribonucleoprotein Q 452 536 - -
Lele51g0107 868 SUPERFAMILY RNA-binding domain, RBD 451 620 IPR035979 GO:0003676
Lele51g0107 868 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 231 868 - -
Lele51g0107 868 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 552 616 IPR000504 GO:0003723
Lele51g0107 868 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 374 442 IPR000504 GO:0003723
Lele51g0107 868 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 454 522 IPR000504 GO:0003723
Lele51g0107 868 MobiDBLite consensus disorder prediction 55 72 - -
Lele51g0107 868 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 372 450 IPR000504 GO:0003723
Lele51g0107 868 MobiDBLite consensus disorder prediction 305 334 - -
Lele51g0107 868 FunFam Heterogeneous nuclear ribonucleoprotein Q 537 687 - -
Lele51g0107 868 Gene3D - 452 536 IPR012677 -
Lele51g0107 868 MobiDBLite consensus disorder prediction 1 117 - -
Lele51g0107 868 CDD RRM_SF 374 442 - -
Lele51g0107 868 MobiDBLite consensus disorder prediction 256 271 - -
Lele51g0107 868 MobiDBLite consensus disorder prediction 273 304 - -
Lele51g0107 868 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 452 537 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0107 Lele-ChrLele51 612858 617694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0107 374 604 Eukaryotic Initiation Factors Gene Family AT3G16380 24.898 1.95e-13 72.0