Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0087 ATGGCGGAGGTGAGATCAACTGGTGTGGTTCAGTGGTTCAGCTATTCTAAAGGCTTTGGCTTTATCAAGCCCGATGATGGAGGAGAAGATCTCTTTGTTCATCAATCTTCCATCAGATCCGAAGGATATCGCAGTCTTGTAGAAGGCGATCGCGTCGAGTTCGTGATTGCCTCTGGTGACAACGACAAAACCAAAGCCATCGATGTGACTGGCCCCAATGGAGCTCCTCTACAATCCAAGAAAGACAATTACGGTGGTCGCGATGGGGGCTATGGCTTTAGCGGTGGATGGAGGGGCGGGGATAGGCGTAATAGCGGAGGAGCTAGCGGTGCTGGCTGTTATCAGTGCGGTGATGTCGGCCATTTAGCCAGAGATTGCAACCGGGCCAATAATGTCGGTGGCCCTTGTTTTAAATGTGGTGAAGTTGGGCATTTGGCTAAGGACTGTTCACTTGGAAATAATGGCGGCGGGGCCTGCTTTAGGTGTCATGAGTATGGGCACATGGCGAGGGACTGCATCAGGGGAAGCGGTGGGGGCGGGGGAGGTTGCTTCACATGTGGTGAAGTGGGTCACTTGGCCAGGGATTGCAGCAAAGACAGCGGAAGGCATGGCGGCGGAGGTGGCGTTGGCAGCACCCGAGGAAATACGTGCTTTAATTGTGGGAGGCGTGGGCATTTTGCGCGAGAGTGCCCCGAAGCCTCTGCATGA 708 0.5438 MAEVRSTGVVQWFSYSKGFGFIKPDDGGEDLFVHQSSIRSEGYRSLVEGDRVEFVIASGDNDKTKAIDVTGPNGAPLQSKKDNYGGRDGGYGFSGGWRGGDRRNSGGASGAGCYQCGDVGHLARDCNRANNVGGPCFKCGEVGHLAKDCSLGNNGGGACFRCHEYGHMARDCIRGSGGGGGGCFTCGEVGHLARDCSKDSGRHGGGGGVGSTRGNTCFNCGRRGHFARECPEASA 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0087 235 ProSiteProfiles Zinc finger CCHC-type profile. 113 126 IPR001878 GO:0003676|GO:0008270
Lele51g0087 235 SUPERFAMILY Retrovirus zinc finger-like domains 154 199 IPR036875 GO:0003676|GO:0008270
Lele51g0087 235 SMART csp_8 7 72 IPR011129 GO:0003676
Lele51g0087 235 ProSiteProfiles Zinc finger CCHC-type profile. 217 232 IPR001878 GO:0003676|GO:0008270
Lele51g0087 235 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Lele51g0087 235 Gene3D - 1 83 IPR012340 -
Lele51g0087 235 SMART c2hcfinal6 158 174 IPR001878 GO:0003676|GO:0008270
Lele51g0087 235 SMART c2hcfinal6 182 198 IPR001878 GO:0003676|GO:0008270
Lele51g0087 235 SMART c2hcfinal6 216 232 IPR001878 GO:0003676|GO:0008270
Lele51g0087 235 SMART c2hcfinal6 112 128 IPR001878 GO:0003676|GO:0008270
Lele51g0087 235 SMART c2hcfinal6 135 151 IPR001878 GO:0003676|GO:0008270
Lele51g0087 235 Pfam Zinc knuckle 182 198 IPR001878 GO:0003676|GO:0008270
Lele51g0087 235 Pfam Zinc knuckle 112 126 IPR001878 GO:0003676|GO:0008270
Lele51g0087 235 Pfam Zinc knuckle 135 150 IPR001878 GO:0003676|GO:0008270
Lele51g0087 235 Pfam Zinc knuckle 158 172 IPR001878 GO:0003676|GO:0008270
Lele51g0087 235 Pfam Zinc knuckle 215 232 IPR001878 GO:0003676|GO:0008270
Lele51g0087 235 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Lele51g0087 235 Gene3D - 180 204 - -
Lele51g0087 235 Gene3D - 134 154 - -
Lele51g0087 235 Gene3D - 210 235 - -
Lele51g0087 235 Gene3D - 155 179 - -
Lele51g0087 235 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lele51g0087 235 SUPERFAMILY Retrovirus zinc finger-like domains 199 232 IPR036875 GO:0003676|GO:0008270
Lele51g0087 235 PANTHER COLD SHOCK DOMAIN PROTEIN 2 176 232 - -
Lele51g0087 235 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lele51g0087 235 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lele51g0087 235 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lele51g0087 235 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lele51g0087 235 SUPERFAMILY Retrovirus zinc finger-like domains 105 151 IPR036875 GO:0003676|GO:0008270
Lele51g0087 235 Gene3D - 92 133 - -
Lele51g0087 235 ProSiteProfiles Zinc finger CCHC-type profile. 159 172 IPR001878 GO:0003676|GO:0008270
Lele51g0087 235 ProSiteProfiles Zinc finger CCHC-type profile. 136 149 IPR001878 GO:0003676|GO:0008270
Lele51g0087 235 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Lele51g0087 235 ProSiteProfiles Zinc finger CCHC-type profile. 183 198 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0087 Lele-ChrLele51 500108 500815 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lele51g0087 CSD 7e-24 CL0021