Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0082 ATGCGAAACGGGGATTACTCACCTTCTCGATTTCAAGCTCAAGCAGATGCTGTCAATCTTATCTGCGGCGCTAAAACACAGTCTAATCCAGAAAATACAGTCGGAGTTCTCACAATGGCAGGGAAGGGAGTTCGGGTTTTGGTGACTCCCACCAGTGATCTGGGCAAGATCTTAGCTTGCATGCACGGACTAGAAATAGGTGGGGAAATGAACCTAGCCGCTGGTATTCAAGTGGCACAATTGGCTCTCAAGCATCGGCAAAATAAGAAACAACAGCAAAGAATTATCATTTTTGCTGGAAGCCCTGTCAACCACGACAAGAAGATGCTGGAGATGATTGGAAGAAAACTAAAAAAGAACAGCGTTGCCCTTGACATTATCAATTTTGGTGAAGAAGATAAAGGCAAGACTGAAAAGCTGGAGGCTCTTCTTGCAGCCGTTAATAATAATGATACAAGCCACATTGTCCATGTTCCTGCTGGTCCCAATGCTCTTTCTGATGTCCTTATAAGTACACCTATTTTTACTGGGGATGGGGAAGGTGGAAGTGGTTTCGCTGCTGCTGCAGCTGGTGGTGCATCTGGATTTGAGTTTGGTGTGGATCCAAACTTGGATCCTGAGCTAGCGCTCGCTTTAAGAGTTTCCATGGAAGAGGAGAGGGCCAGACAGGAGGCAGCTGCAAAAAAGGCTGCTGAGGATGCTGCTAAACAGGAGAAAGGAGGGGATCAGCAAGCCAGTTCACAAGATGCAACAATGACTGAGCAAACCAGTGCTGCAACATCTGAAGCTGATAACAAGACAAATGATATGATGGATGATGAGAATGCTCTCCTGCAGCAAGCACTTGCAATGTCAATGGATGATCCTGCCATTAACCATGACTTAAGGGATACAGATATGTCAGAAACAACTGCAGAAGATTCCGATTTGGCCCTTGCCCTTAAATTGTCGGTAACAGACAATACAAAGGACTCAGGAAGCCAGTCAGACATGAGTAAATTGTTGGCTGATCAGTCCTTCGTATCTTCTATCCTTGCTTCACTTCCTGGGGTTGACCCAAATGATCCATCTGTCAAAGATCTGCTGGCCTCCATGCAAAGTCAGTCTGAGCCCCAGCAGAAGAATGAAGATAAGCCGCCGAATGAGGAGGAAAAGAAGTAA 1161 0.4591 MRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIIFAGSPVNHDKKMLEMIGRKLKKNSVALDIINFGEEDKGKTEKLEALLAAVNNNDTSHIVHVPAGPNALSDVLISTPIFTGDGEGGSGFAAAAAGGASGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAAKQEKGGDQQASSQDATMTEQTSAATSEADNKTNDMMDDENALLQQALAMSMDDPAINHDLRDTDMSETTAEDSDLALALKLSVTDNTKDSGSQSDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQSEPQQKNEDKPPNEEEKK 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0082 386 FunFam 26S proteasome non-ATPase regulatory subunit 4 1 171 - -
Lele51g0082 386 SMART uim 305 324 IPR003903 -
Lele51g0082 386 SMART uim 273 292 IPR003903 -
Lele51g0082 386 SMART uim 203 222 IPR003903 -
Lele51g0082 386 FunFam 26S proteasome regulatory subunit N10 201 287 - -
Lele51g0082 386 Gene3D von Willebrand factor, type A domain 1 171 IPR036465 -
Lele51g0082 386 Pfam von Willebrand factor type A domain 1 100 IPR002035 -
Lele51g0082 386 MobiDBLite consensus disorder prediction 223 239 - -
Lele51g0082 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 378 - -
Lele51g0082 386 ProSiteProfiles VWFA domain profile. 1 174 IPR002035 -
Lele51g0082 386 SMART VWA_4 3 160 IPR002035 -
Lele51g0082 386 Gene3D - 201 287 - -
Lele51g0082 386 MobiDBLite consensus disorder prediction 360 374 - -
Lele51g0082 386 MobiDBLite consensus disorder prediction 346 386 - -
Lele51g0082 386 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 203 222 IPR003903 -
Lele51g0082 386 Pfam Ubiquitin interaction motif 306 317 IPR003903 -
Lele51g0082 386 Pfam Ubiquitin interaction motif 273 288 IPR003903 -
Lele51g0082 386 Pfam Ubiquitin interaction motif 205 218 IPR003903 -
Lele51g0082 386 Coils Coil 213 238 - -
Lele51g0082 386 MobiDBLite consensus disorder prediction 223 269 - -
Lele51g0082 386 MobiDBLite consensus disorder prediction 240 265 - -
Lele51g0082 386 SUPERFAMILY vWA-like 1 160 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0082 Lele-ChrLele51 478768 482873 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0082 51 478768 482873 Lele54g0545 54 11893061 11894809 CCT
Lele51g0082 51 478768 482873 Lele56g0889 56 7479772 7481399 CCT
Lele49g0073 49 448012 457822 Lele51g0082 51 478768 482873 hybridization
Lele50g0086 50 546705 553350 Lele51g0082 51 478768 482873 hybridization