LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele51g0057	ATGGGTGATCGGCACCGCCATTTATTGGCTGCTCCACCGCCGGAACTGGCAAAGCCACTCAATTCCAAAAGCAGTTCCCATCAAACTATGTTGGTAGGGTTTGTTTCAGGCATTTTAGCAGCAATGGTAGTTGCATTATTATTGTACTGCCTCTTCAAGAGAAATGGTATTCCACTTAAATGCAAAAGGGGTTCTTCGAAAGGTGCAAAAGATGGAAAGAGTTTGAAATATGATAAGATAACGTTGAGGCGTTTTGATTTTGAGGAACTAGAGAAGGCTACAAATAATTTTAGTCCAGATTGCTTGCTGGGTTCTGGTGCATTTGGAATGGTGTACAAAGGAACCTTTAAATTAGAAGGAACATTAGCCATTAAAAGAGCTAATGGTGAATCATTCTTAAGCAAGGAAGAGTTCAGAAACGAAGTGAGCCTCATTTCGAAAGTAAATCACAGGAATCTTGTTAATTTGGTGGGATATTGTGAAGAACCTGGAGATGGGGTCCAAATGCTGGTTTATGAGTATGTGCCTAACGGTTCTCTGCTCGAGTACATGATGGGAAAAAGAGGGAAGAGCTTAACTTGGAGGCAAAGAGTAAACGTAGCAATAGGAGCAGCTAAAGGTATAGCTCATTTGCATGAAGGGGTGAAACCAAGTATAATACATCGTGATATAAAACCGAGCAACATCTTAATAGGGGAAAGGTTTGAGGCTAAAGTTTCAGATTTTGGGTTGATAAAATCCGGACCAACTGGTGATCAATCTCATGTTAGCAGCCAAATCAAAGGAACCCCAGGATACCTTGATCCCACTTATTGTTCAACCTTTCATTTGACCACTTTCAGTGACGTTTACAGTTTCGGAGTCATACTTCTCCAACTTATTTCCACTAGACCAGCCGTTGATTCCACAAAAAGTCAAAATATTTCTCATATTTTTGATTGGGCAAGGCCTAGCTTAGAGAAGGGTAATGTTGAAGAAATCATAGATGCCAATTTACTATGTGAGCCTTGCAATATGAAGGTTATGTTGAAGATGGGTCAGCTTGCCCTCCGATGTGGGGCTCAAGCACCAAAGCATCGTCCTACAATGACTCAAGTATGTCAAGAGCTACAAGAAGCTCTCCGTGCCGCTGATAGCTTGATTGGCAAACTACCTTCGAAAAATTTCAGAAAATCAAGTAGCACATCTCAAGAATTAACAGAATCAGAGGTTCTCAAATCTATAGAAAACTATGACCGTTCGCAGAGTTTTGTAAGCATAGATGGTGTTGGGTTCCAGAAGTTTCATATTGATATGGATAATTTATCCTTTCAAAGTACAAGCTTAAGATGCCTAGAAAATAATAGTATTAGCATTGACACTGATGTCAACACTTTGAGGAGAATTCAAGTAAGATATATAAGGCTATGA	1410	0.3986	MGDRHRHLLAAPPPELAKPLNSKSSSHQTMLVGFVSGILAAMVVALLLYCLFKRNGIPLKCKRGSSKGAKDGKSLKYDKITLRRFDFEELEKATNNFSPDCLLGSGAFGMVYKGTFKLEGTLAIKRANGESFLSKEEFRNEVSLISKVNHRNLVNLVGYCEEPGDGVQMLVYEYVPNGSLLEYMMGKRGKSLTWRQRVNVAIGAAKGIAHLHEGVKPSIIHRDIKPSNILIGERFEAKVSDFGLIKSGPTGDQSHVSSQIKGTPGYLDPTYCSTFHLTTFSDVYSFGVILLQLISTRPAVDSTKSQNISHIFDWARPSLEKGNVEEIIDANLLCEPCNMKVMLKMGQLALRCGAQAPKHRPTMTQVCQELQEALRAADSLIGKLPSKNFRKSSSTSQELTESEVLKSIENYDRSQSFVSIDGVGFQKFHIDMDNLSFQSTSLRCLENNSISIDTDVNTLRRIQVRYIRL	469

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele51g0057	469	Gene3D	Transferase(Phosphotransferase) domain 1	175	388	-	-
	Lele51g0057	469	ProSiteProfiles	Protein kinase domain profile.	97	374	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele51g0057	469	SMART	serkin_6	97	374	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele51g0057	469	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	219	231	IPR008271	GO:0004672\|GO:0006468
	Lele51g0057	469	PANTHER	OS01G0750732 PROTEIN	26	396	-	-
	Lele51g0057	469	SUPERFAMILY	Protein kinase-like (PK-like)	76	370	IPR011009	-
	Lele51g0057	469	Gene3D	Phosphorylase Kinase; domain 1	69	174	-	-
	Lele51g0057	469	CDD	STKc_IRAK	103	372	-	-
	Lele51g0057	469	Pfam	Protein tyrosine and serine/threonine kinase	102	370	IPR001245	GO:0004672\|GO:0006468
	Lele51g0057	469	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	66	174	-	-
	Lele51g0057	469	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	175	384	-	-
	Lele51g0057	469	ProSitePatterns	Protein kinases ATP-binding region signature.	103	125	IPR017441	GO:0005524
	Lele51g0057	469	MobiDBLite	consensus disorder prediction	1	22	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele51g0057	Lele-ChrLele51	348071	350084	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele51g0057	28	400	Receptor kinase-like Gene Family	AT1G51850	39.267	3.99e-77	256

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Lele51g0057		PK_Tyr_Ser-Thr	3.7e-41	CL0016