Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0056 ATGGATTTTGTGGCGAATCCTTTTCCCGTGCCTTCTTCCCTGTTGGGCTCCTTCGGGAGCTTCATTGAGAGGGTTAGATGCATGAGCAGCCTCGCGGTTTCTGTTATAATTGGAAACATCTTCTCTGCGATCTTGACATTTTGCTTTGCCTTAGTGGGAACATTATTGGGTGCCATGACAGGGGCTTTGATAGGCCAAGAGACTGAGAGTGGCTTCATTAGAGGAGCAGCAGTTGGTGCCATATCTGGAGCTGTTTTCTCCATTGAAGTATTTGAATCTTCTCTTGTTCTCTGGCAATCTGATGAATCTGGGATTCGGTGTCTCTTATATCTGATTGATGTCATTGCTAGCCTACTGAGTGGGAGACTTGTGCGTGAGAGGATTGGCCCTGCCATGTTAAGTGCTGTCCAAAGTCAGGTTGCTCATTATATCTCTGCTCTTAAATATCAGATGGGTGCTGTTGAAACAAACTTCGAGGAGGTTCAAAACATCTTTGACACCGGTGGTTGCAAGGGTTTAACAGGAGATTATGTTGAAAAGATCCCAAAGATCACAATCACAAATGATAATAATATTGATGCTTGGGGTGAAAGAGTTTCTTGTTCAGTCTGCCTCCAGGACTTCCAGGCTGGAGAGACAGTTCGAAGTTTGCCTCATTGCCATCACATGTTCCACCTACCATGCATAGATAAGTGGCTCTTCAGGCACGGTTCATGTCCGTTATGCAGAAGGGATCTGTAA 741 0.4521 MDFVANPFPVPSSLLGSFGSFIERVRCMSSLAVSVIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIRCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQVAHYISALKYQMGAVETNFEEVQNIFDTGGCKGLTGDYVEKIPKITITNDNNIDAWGERVSCSVCLQDFQAGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0056 246 SUPERFAMILY RING/U-box 200 246 - -
Lele51g0056 246 ProSiteProfiles Zinc finger RING-type profile. 201 243 IPR001841 -
Lele51g0056 246 SMART ring_2 201 242 IPR001841 -
Lele51g0056 246 Pfam Ring finger domain 200 243 IPR001841 -
Lele51g0056 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 246 IPR013083 -
Lele51g0056 246 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 24 245 IPR044523 -
Lele51g0056 246 CDD RING-H2_PA-TM-RING 201 243 - -
Lele51g0056 246 FunFam NEP1-interacting protein-like 1 161 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0056 Lele-ChrLele51 341663 343175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0056 20 246 C3H Transcription Factor Family AT5G66070 73.128 2.51e-113 322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0050 49 333196 336548 Lele51g0056 51 341663 343175 hybridization
Lele50g0058 50 404352 410937 Lele51g0056 51 341663 343175 hybridization