Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0055 ATGGCATCTAGAAATCCTTTCGACAACATATTGAAAACTCTCGAGAAGCCTGGAGGCGGTCATTTCGGCAAGTACTATAGTTTACCGGCTCTCAATGATCCTAGAATCGATAAGCTTCCTTACTCTATTAGGATACTTCTGGAATCCGCGATTCGCAACTGCGATGAGTTTCAAGTTAAGAGAAATGATGTTGAAAAAATTATTGATTGGGAGAACACCTCTCCTAAACTGGTAGAAATTCCTTTCAAGCCTGCAAGAGTGCTTCTGCAGGATTTTACTGGGGTGCCTGCTGTTGTTGATCTCGCTTGCATGCGAGATGCAATGAACAAGCTAGGCGGTGATTCTAATAAAATTAATCCCTTGGTTCCAGTTGATCTTGTCATAGATCACTCAGTTCAGGTAGATGTGGCAAGATCAGAAAATGCTGTGCAGACAAACATGGAACTTGAATTCAAGAGGAACAAGGAAAGATTTGGTTTCCTCAAATGGGGTTCAAAAGCATTCAATAACATGCTTGTTGTTCCTCCTGGATCAGGGATAGTCCACCAGGTTAATTTAGAATATCTTGGCAGAGTTGTGTTCAATACAGATGGCATGCTTTACCCTGATAGTGTAGTCGGGACTGACTCACATACAACTATGATAGATGGCTTGGGTGTTGCTGGGTGGGGAGTTGGTGGAATCGAAGCAGAAGCTGCAATGCTTGGCCAGCCAATGAGCATGGTTCTACCCGGTGTGGTTGGGTTTAAATTATTAGGCAAACTAAGAGATGGTGTGACAGCTACTGACTTGGTATTGACAGTTACACAAATGCTAAGAAATCACGGGGTTGTTGGCAAGTTCGTTGAGTTCTATGGGGAAGGCATGAGTGAACTGTCTTTGGCAGATCGTGCCACCATTGCAAACATGTCTCCTGAGTATGGCGCAACAATGGGCTTCTTTCCTGTAGATCATGTCACTTTACAATACTTGAAACTGACTGGCAGAAGTGATGAGACTGTTTCTATGATAGAGTCGTATTTACGAGCTAATAAGATGTTTGTTGACTACAATGAGCCCCAGGCTGAGAGAGTCTACTCTTCATATCTAGAGCTCAATCTCGAAGATGTGGAGCCCTGTGTATCAGGTCCAAAGAGGCCCCATGATCGAGTCTCTTTGAAAGAAATGAAGGCAGATTGGCATTCCTGCCTTGACAATAAAGTTGGGTTTAAGGGTTTTGCTGTACCAAAGGAATCTCAGAATAAGGTTGCAGACTTCACTTTCCACGGGGAACCAGCACAGCTTAGGCATGGGGATGTTGTTATTGCTGCTATCACCAGCTGTACAAATACGTCAAATCCCAGTGTAATGCTTGGAGCTGCACTGGTTGCAAAGAAAGCTTGTGAATTAGGATTGAAGGTTAAGCCATGGATTAAGACCAGTCTTGCTCCAGGTTCTGGTGTTGTGACAAAGTATTTGCAAAAGAGTGGCCTGCAGAAGTATTTGAATCAGCTCGGGTTTCATATTGTTGGGTATGGATGTACCACCTGTATTGGTAATTCAGGGGATATTGATGAGGCTGTTGCATCTGCTATTACCGAAAATGATATAGTAGCTGCAGCTGTATTGTCTGGAAATAGAAATTTTGAGGGACGAGTTCATCCATTAACAAGGGCTAATTATCTTGCTTCTCCTCCTCTCGTTGTTGCCTATGCCCTTGCTGGCACGGTGGACATTGACTTTGACACTGAACCCATTGGGTTGGGTAATGAGGGAAGGAAGATCTTCTTCAAGGATATTTGGCCTACCAGTGAAGAAATAGCAGATGCTGTACAATTAAGCGTGCTTCCTGATATGTTTAGGGCTACATATGAAGCAATCACCCAAGGAAATCCCATGTGGAATCAGTTATCTGTACCTTCTGGCACTCTCTATGCATGGGACCCTACCTCAACTTATATTCATGAACCTCCTTATTTTCACGATATGAGCATGTCTTCCCCAGGACCTCATGGGGTAAAGGATGCTTACTGTTTGCTCAACTGTGGAGACAGCATTACAACTGACCACATCTCCCCGGCTGGTAGCATCCACAAGGATAGTCCCGCAGCCAGATACCTCATGGAACGTGGGGTTGATAGACGAGATTTCAACTCCTATGGAAGTCGTCGTGGTAATGATGAGGTGATGGCACGGGGCACTTTTGCTAATATTCGCCTCGTTAACAAACTATTGAATGGAGAAGTTGGACCTAAAACTATTCATATTCCTTCTGGGGAGAAGCTATCCGTTTTTGATGCTGCAATGAAATACAAGAGTGAGGGGCATGAGACAATCGTTTTGGCTGGAGCTGAGTATGGAAGTGGAAGTTCTCGTGATTGGGCTGCAAAAGGACCATTGTTATTGGGTGTGAAAGCTGTCATAGCAAAAAGCTTCGAAAGGATTCACCGAAGTAATTTGGTAGGAATGGGTGTCATTCCGCTATGTTTTAAGGCTGGGGAAGATGCTGAGACTCGGGGGTTGACTGGCCACGAACGTTACACCATTAAACTTCCTAGCAGAGTGGACGATATACGACCCGGTCAAGACGTCACAGTCTTGACTGATAATGGGAAGTCATTTACATGTACCCTGAGGTTTGATACAGAGGTTGAACTTGCTTACTTTAATCATGGAGGAATCTTGCAATATGTGATCAGAAACTTGATAAATGCTAAACAATAA 2703 0.4391 MASRNPFDNILKTLEKPGGGHFGKYYSLPALNDPRIDKLPYSIRILLESAIRNCDEFQVKRNDVEKIIDWENTSPKLVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQTNMELEFKRNKERFGFLKWGSKAFNNMLVVPPGSGIVHQVNLEYLGRVVFNTDGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLLGKLRDGVTATDLVLTVTQMLRNHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIESYLRANKMFVDYNEPQAERVYSSYLELNLEDVEPCVSGPKRPHDRVSLKEMKADWHSCLDNKVGFKGFAVPKESQNKVADFTFHGEPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLKVKPWIKTSLAPGSGVVTKYLQKSGLQKYLNQLGFHIVGYGCTTCIGNSGDIDEAVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDTEPIGLGNEGRKIFFKDIWPTSEEIADAVQLSVLPDMFRATYEAITQGNPMWNQLSVPSGTLYAWDPTSTYIHEPPYFHDMSMSSPGPHGVKDAYCLLNCGDSITTDHISPAGSIHKDSPAARYLMERGVDRRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTIHIPSGEKLSVFDAAMKYKSEGHETIVLAGAEYGSGSSRDWAAKGPLLLGVKAVIAKSFERIHRSNLVGMGVIPLCFKAGEDAETRGLTGHERYTIKLPSRVDDIRPGQDVTVLTDNGKSFTCTLRFDTEVELAYFNHGGILQYVIRNLINAKQ 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0055 900 ProSitePatterns Aconitase family signature 2. 499 512 IPR018136 -
Lele51g0055 900 Gene3D - 597 658 - -
Lele51g0055 900 SUPERFAMILY LeuD/IlvD-like 637 895 - -
Lele51g0055 900 CDD AcnA_IRP_Swivel 676 844 IPR044137 -
Lele51g0055 900 Gene3D Aconitase, domain 3 4 372 IPR015931 -
Lele51g0055 900 CDD AcnA_IRP 86 570 - -
Lele51g0055 900 FunFam Aconitate hydratase 5 372 - -
Lele51g0055 900 FunFam Aconitate hydratase 661 897 - -
Lele51g0055 900 FunFam cytoplasmic aconitate hydratase 373 596 - -
Lele51g0055 900 Pfam Aconitase C-terminal domain 697 825 IPR000573 -
Lele51g0055 900 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 3 895 IPR006249 -
Lele51g0055 900 PRINTS Aconitase family signature 290 303 IPR001030 -
Lele51g0055 900 PRINTS Aconitase family signature 372 386 IPR001030 -
Lele51g0055 900 PRINTS Aconitase family signature 200 213 IPR001030 -
Lele51g0055 900 PRINTS Aconitase family signature 437 448 IPR001030 -
Lele51g0055 900 PRINTS Aconitase family signature 147 160 IPR001030 -
Lele51g0055 900 PRINTS Aconitase family signature 276 289 IPR001030 -
Lele51g0055 900 PRINTS Aconitase family signature 499 512 IPR001030 -
Lele51g0055 900 PRINTS Aconitase family signature 171 179 IPR001030 -
Lele51g0055 900 PRINTS Aconitase family signature 214 229 IPR001030 -
Lele51g0055 900 Pfam Aconitase family (aconitate hydratase) 65 568 IPR001030 -
Lele51g0055 900 Gene3D Aconitase, domain 4 661 897 IPR015928 -
Lele51g0055 900 Gene3D Aconitase, domain 3 373 596 IPR015931 -
Lele51g0055 900 SUPERFAMILY Aconitase iron-sulfur domain 14 633 IPR036008 -
Lele51g0055 900 TIGRFAM aconitase_1: aconitate hydratase 1 23 896 IPR006249 -
Lele51g0055 900 ProSitePatterns Aconitase family signature 1. 433 449 IPR018136 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0055 Lele-ChrLele51 324178 330356 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0055 51 324178 330356 Lele53g1285 53 21326173 21328646 CCT
Lele51g0055 51 324178 330356 Lele54g1257 54 17919882 17922306 CCT
Lele49g0049 49 319049 325208 Lele51g0055 51 324178 330356 hybridization
Lele50g0057 50 389962 396192 Lele51g0055 51 324178 330356 hybridization