Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0049 ATGGCGGATTCTCCTCTCAGAAGGACTTCAAGGTCTCCGTCCCCCTGGAGAGCCCAGTCTAGATCGAGATCCAGGTCAAAGACTCCGCCCAGGGCTAGGTCAAGGTCTCGTTCTAGATCAAGATCCAGGTCAAGACACAGGCCCAGGTCCCGTTCAAGAAGCCGGGGCAGATCAAGGTCAAGAAGTCATGGAAGGCCTGAATCTTTAAATCCTGGGAATACACTCTATGTTACTGGTCTATCTTCAAGGGTTACTGAGAGGGGCCTAGAAGAGCACTTTTCTAAGGAAGGAAAGGTTGCTTCATGTTTCCTTGTGGTGGAGCCTCGTACACGTATTTCCCGCGGTTTTGCTTTTGTTACGATGGATACTGTTGAGGATGCTAACCGCTGTATCAAGTATCTTAATCAATCTGTACTTGAAGGTCGCTATATTACAGTTGAACAGGTAATGGGATTTCCTCTTGGTTAG 468 0.4808 MADSPLRRTSRSPSPWRAQSRSRSRSKTPPRARSRSRSRSRSRSRHRPRSRSRSRGRSRSRSHGRPESLNPGNTLYVTGLSSRVTERGLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTVEDANRCIKYLNQSVLEGRYITVEQVMGFPLG 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0049 155 MobiDBLite consensus disorder prediction 1 77 - -
Lele51g0049 155 SMART rrm1_1 74 147 IPR000504 GO:0003723
Lele51g0049 155 MobiDBLite consensus disorder prediction 24 60 - -
Lele51g0049 155 CDD RRM_RBMX_like 72 148 - -
Lele51g0049 155 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 61 148 - -
Lele51g0049 155 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 144 IPR000504 GO:0003723
Lele51g0049 155 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 151 - -
Lele51g0049 155 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Lele51g0049 155 MobiDBLite consensus disorder prediction 1 23 - -
Lele51g0049 155 Gene3D - 11 151 IPR012677 -
Lele51g0049 155 SUPERFAMILY RNA-binding domain, RBD 32 147 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0049 Lele-ChrLele51 300563 302654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0049 70 147 Eukaryotic Initiation Factors Gene Family AT3G11400 35.897 9.57e-08 48.1