Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0030 ATGGGAGGTGACAGTGCCGTTGACGATGCCACCGCCACCCAGTCCATGGGCGGTGAGGGAGTGAATCTAAACGTTCGATGCTCCAATGGTTCGAAATTCTCGGTTCAGATTAGCCTCGAATCCGCCGTCGGATTGTTCAAGGAGCTTGTCGCTCGGAATTGCGATATCCCCGCCGATCAACAGCGGCTGATTTACAAGGGCCGGATCTTAAAGGACGATCAAATTCTGCAAAGCTACGGTCTGGAGGCAGATCATACTGTCCATCTGGTTCGTGGCTTTGCCCCAGCTGCTGCACCCAATTCAGCTGGTGGGACCAATATCAGTGCTACAAATACCGCAACAAATAATGCAAGAGGTGCTGCTAATGAAGGTGAGGGTCTTGGAGGTTCTGGTTTTGGAGATTCACCGTTTCCTGGACTAGGCATCAATGGGCTTGGGGGAAGTGGCGTCAATGGCTTGTTTGGAGCAGGCCTTTTGGATCCTGAACAAATGCAGCAATCATTTATTTCTAATCCCAATATGATGAGAGAAATGATGAACACACCTGCTATACAGAATCTACTTAATAATCCTGAGATAATGCGGAATTTTATTATGAGCAATCCACAATTACGAGAGCTTATGGACCGAAATCCTGAGCTAGCACACATACTTAATGATCCAGCCACTCTCCGTCAAACACTTGAAGCTACAAGAAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACCGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGACGGATGTACGAAAATGTTCAAGAGCCATTCTTAGATGCCACAACAATGGCTGGTAATACAGGAAATGACAACTCTAACCCGTTTGATGCACTTTTGGGCACTCAAGGTGGACAAGCCAGGGATCGATCTACTAATCCTTCAACTACAAGTGCTGAAGAAACTGCTGGCTCTCCCTCCCCTAATACTAACCCACTTCCTAATCCTTGGACCTCTACTGGATCTGGAGGTGCTCAAAATAACACTGCAAGGACAACCACTGGTGGGGACACTAGGCAGCAGGCACCCACTGGCTTAGGAGGTTTTGGTTCGCAGGATTATCAAGGCCTGCTGGGTTCTATGCCCGATCCTGCCTCATTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAACCCACAGGCTATGAACCAGATTCTTGGTGTCAATCCTGACCAACGTGGCTTACCAGATCTAAATTCTCATCTTAGAGAAATGATGCAAAGTCCTGAGTTCCTTCGCTTGTTGTCTTCACCTGAGACAATGCAGCAACTCTTGTCTTTTCAGCAAACTCTTCTTTCGCAGCTTGGTCAGTCACCATCAACACAGGAATCAGGTCAGACTGGTCGAGGCACTGGAACGATGAATAACTCAGGGTTGGAGATGTTGATGAACATGTTTGGTGGACTTGGGGCTGGTAGCCTTGCAGTTCCGAACAGATCAAATGAGCCACCGGAGCAAATGTATGCCACCCAGTTGTCACAGCTTCAAGAGATGGGCTTCTTTGATACGCAGGAGAACATTCGAGCGCTCATCGCCACTCAAGGGAATGTTCACGCAGCAGTTGAACGGCTTCTGGGCAACTCTGGCCAGTAG 1659 0.478 MGGDSAVDDATATQSMGGEGVNLNVRCSNGSKFSVQISLESAVGLFKELVARNCDIPADQQRLIYKGRILKDDQILQSYGLEADHTVHLVRGFAPAAAPNSAGGTNISATNTATNNARGAANEGEGLGGSGFGDSPFPGLGINGLGGSGVNGLFGAGLLDPEQMQQSFISNPNMMREMMNTPAIQNLLNNPEIMRNFIMSNPQLRELMDRNPELAHILNDPATLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLDATTMAGNTGNDNSNPFDALLGTQGGQARDRSTNPSTTSAEETAGSPSPNTNPLPNPWTSTGSGGAQNNTARTTTGGDTRQQAPTGLGGFGSQDYQGLLGSMPDPASLTQLMQNPAISQMMQSILSNPQAMNQILGVNPDQRGLPDLNSHLREMMQSPEFLRLLSSPETMQQLLSFQQTLLSQLGQSPSTQESGQTGRGTGTMNNSGLEMLMNMFGGLGAGSLAVPNRSNEPPEQMYATQLSQLQEMGFFDTQENIRALIATQGNVHAAVERLLGNSGQ 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0030 552 PANTHER UBIQUILIN 17 547 IPR015496 -
Lele51g0030 552 MobiDBLite consensus disorder prediction 456 478 - -
Lele51g0030 552 CDD Ubl_Dsk2p_like 21 93 - -
Lele51g0030 552 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Lele51g0030 552 CDD UBA_PLICs 510 548 - -
Lele51g0030 552 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Lele51g0030 552 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 504 549 IPR015940 -
Lele51g0030 552 MobiDBLite consensus disorder prediction 277 366 - -
Lele51g0030 552 FunFam Ubiquitin domain-containing protein DSK2b 198 254 - -
Lele51g0030 552 Gene3D - 196 254 - -
Lele51g0030 552 SMART uba_6 510 548 IPR015940 -
Lele51g0030 552 Pfam UBA/TS-N domain 510 546 IPR015940 -
Lele51g0030 552 Gene3D - 9 104 - -
Lele51g0030 552 FunFam Ubiquitin domain-containing protein DSK2b 493 551 - -
Lele51g0030 552 Gene3D - 492 552 - -
Lele51g0030 552 FunFam Ubiquitin domain-containing protein DSK2b 18 105 - -
Lele51g0030 552 SMART CBM 365 407 IPR006636 -
Lele51g0030 552 SMART CBM 411 446 IPR006636 -
Lele51g0030 552 SMART CBM 201 240 IPR006636 -
Lele51g0030 552 SMART CBM 151 188 IPR006636 -
Lele51g0030 552 SMART ubq_7 21 92 IPR000626 GO:0005515
Lele51g0030 552 SUPERFAMILY Ubiquitin-like 11 107 IPR029071 -
Lele51g0030 552 MobiDBLite consensus disorder prediction 277 362 - -
Lele51g0030 552 SUPERFAMILY UBA-like 506 548 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0030 Lele-ChrLele51 203970 209647 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0028 49 184455 190270 Lele51g0030 51 203970 209647 hybridization
Lele50g0033 50 235007 240452 Lele51g0030 51 203970 209647 hybridization