Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0020 ATGACGAGCATAAGGCCTTTGTCCGAGGATGTTCGAAGTTCATTGCGTTCTGGCATATTCTTGTTCGACTTGACCAGGGTTGTGGAAGAACTGGTTTTCAATAGCCTGGATGCTGGCGCAACCAAGGTCTCAGTCTTTGTTTGTGTCAGGAGCTGTCACCTAAAAGTAGTGGACGATGGAGTTGGCATCACTCGAGATGGATTGATGTTGGTTGGAGAAAGATATGCAACATCAAAGTTACTTAGTTTGGCTGATCTGAATGACACAAGTGGAAGCTTTGGTTTTCGAGGGGAAGCTTTAGCTTCAATTTCAGAAGTTTCACTGTTGGAAATTTTGACAAGAACTTTTGGAAGGGCAAATGGATACCGCAAAGTATTGAAGGGCTGCAAGTGCCTATATCTTGGTATAGATGATGATAGAAAGGAAGTGGGAACAACAGTTGTTGTCCGTGATTTATTTCACAACCAACCAGTTCGGAGGAAATATATGCAATCCAGCAACATTCTCTATACTGTTCCCTACAGTGAGGGTGAACTTCTTTGCACACATTCTTCTTCTTCTCCACTGTCACTTTTAACCAGTGGCTTTGGGGTGGAGGTCTCAAGCTCTCTTCATGAATTTCAAGATCAGGACGATTTCATAAAGCTTTCAGGATACATATCTAGCCCCTGCAATAGTTTTACCCTGAAGGCCTTGCAGTATATCTATATTAACTCACAGTTCACCAGCAAAGGCCCAATTCATAAGCTTCTCAGTCAACTGGCTATTAGGTTTGAGCATCTTGACTCACAGAAGGCAGGTGACAAGTTCCAGAACAAGAAGAGAAGTAGATCTCAAGCATATCCAGCTTATATCTTGAATTTGCTTTGCCCACGGTCTCTGTATGATTTAACCTTTGAGCCATCAAAGACTTCTGTTCAATTTAAGGATTGGGCTTCTATATTGAACTTCATTGAGAATGCCATAAAAAAATTTTGGGGGAAGAACATAACTCATGGAGAGTCTTCTAATGCTACTCATGTGGAACAAGCAGCTCAACCGTGCAAGGAAATTGACAATGTCATTTTGGCTGAAGCAGATGTAGTGGACTGTGGAAACCAACAGAGTAAGGAATTCATTGACCTTTTCTTTTCCACTTCAGACAAGTTAGCTGAAGATGACCATTGCCTATCTGATGGGCAAGTCACGAGATCATCCCTTGGTTATTTGCCCATGGATGCTGCAAAGTTCAAACAGAAACAAAATAAGAGAGACTTTCTATGCCAGACTGGTTACTCTAGCTTTTCAATGGATGGATCATATACCAAGGGTGGCTCCATTGTGACTAAAAATAATTGCAGTATGTGGAATGATAACAACTGTCTCTCTGGAAGAGATGATTTCTTGGATGGTGGGTTTGCCGCTGGAGAAATCTTCAATGATAATGTATCTTTTGATGAACCAAGCTCGTCAAAGGGAAATAAATTTCTTGAAGTTGATGACGATATGCTCAGTGAATCATCCCAAGGTGCCTTTCATTATGTCTGTTGTGATCTCTGTAATGATGTAGAGATTGGCAGGGATTTTCAAAAGCCTTTTCTGAAGAGTTGCTCTAGACGAGGTAGTATTCTGCATGAGAAGGCCTTGTTTGCAAATGATGAACATGAGTTTCAAATTGATGGCTATAGCCCCAAAGAAGATCTGGGAGTGTGCAGTGGCAGAGTTGAGAACTTAAGTGCCCATCCTTGTCCAGAAGTTGTCAAAAATTTTAACACATCTAGAGATTCTGTTTTTCTCTCAAGAGCATCTTCTGAAGAAAAATCTTTTCCTTCAGATTCATGCTCTTTGGCAACACAAATGGGATGCCCAGGGTTTGCTGAAGAAAAATGTTTTCCTTCAGATTCAAGCTATCCAGAGTTATTGAGATCAGAACGTTACCCTATCTTCAAGACACTGTTACCTGAAGCCACAGCATGGGATGTTGATCATATGACAGGCACTGATCTTGATGTTCTTGGAGGAATACCTAGATGCTACAAATGGGGTGGTTATAACAGAACTTTTGATGATAAAGAAAATAGATGCAATTTTAGCTGTGATATCTCATACAGCTTCAACTCAGATCAGTGCATGAGAAGTTTTGGAAACTATAGATTGTATTCTGATGGTCCCAATGACTGTAATAATTTAAATTTTACCAAATGGCCAGATCCTAAGACGGTCAAATGGCCTGATTGTTATGATATAGATTCCAACAAATGGTCAGATATTTTAACAGATGAGTCAGGTTGGTTGTGTCCAGTGTCATGTGGTGGAAACTACCGAAGAACTAGCAAGAACAGAATAAAAAAGGATCATGTTAGACATCCAGCTTCAGAAAAGAATCATGAAAGATCTAGAAGAAGCTTTTCTGCCCCTCCATTTCACAAAAGCAGAAGAAGGTTTAATTCTTTAAATCAACCTTTAACAATGATAGCCAGAAGACCTGCGGGCCAAACCTCCAATTGTGCTTTAAAGAATAGAGAAGCTGATGAAGAGTGTCCCCAGCAATCTTCTAGTCCACTTCACTCAACCCCTGAGGAACATCTGTTGCTTGAAAATACTTCCATTGTGAAGAAGAAAACAGCTGCTCTGGGAGATATACGTCAGGTTAATAGCGATAAAGAGTCTGAATGGTTTCACAGTTTAAATAGTCAAAGCAATTCTCCATTTAAAGAATTGACCTCAAGAAAAGTGGAAGATTCTATGGATTACAGTACAAAATGGGGGAACTGCTCACCTCAAATTCCAACAAGGGATAAATCACTTGATTTTCATAGTCAAGATGATATACTTGACATATCTTCTGGATTCTTGCATCTTGCTGGTGATTCATTAGTACCTGAAACTATCAGTAAGAACTACCTTGAGAATGCCAGAGTTCTTCATCAGGTGGATAAGAAATTCATTCCAATTGTGGCCGGCGGAAACCTTGCTGTTATTGATCAGCATGCGGCAGATGAGAGAATCAGATTGGAAGAATTACGTCAAAAGGTATTATCAGGAGAGGCAAGGACAATAACCTATCTAGATGCTGAACAGGAACTGGTGCTGCCTGAGATTGGCTATCAACTATTGTACAGTTATTCTGAACATATTAAAGATTGGGGATGGATCTGTAACATTCATGCTCAAGATTCAAAATCCTTCAAGCAGAATTTGGATATTCTCAACAGGCAGCCAACTGTTGTTGCACTTATTGCGGTACCCTGCATTTTAGGTGTCAACTTAAATGATACTGATCTTATGGAATTTCTTCAGCAGCTTGCTGACACGGACGGATCATCAACAGTGCCACCCTCTGTTGTGCGAGTTCTTAATTTGAAAGCATGCAGAGGTGCAATTATGTTTGGAGACTCGTTGCTGCCATCTGAATGTTCGCTCATTGTTGAAGAGCTAAAGCAAACATCACTCTGTTTCCAATGTGCTCACGGGCGACCGACTACTGTTCCTCTTGTCAACTTGGAGGCGCTGCATAATCAGATAGCTAAGCTTCGACCATTGATTGATTGCTCAAATGATGAGTGGCATGGACTACGAAGGCATAAAATTAGTGTTGAACGTGCTGCACAACGTTTACCCATATCGGTTGTGTATGGTTCTGATCTGGAAGTTTTAAGGTCTCAACCTACTGATTTGACATATGGAAAGGCAACTATAGATGCACGTTAA 3690 0.406 MTSIRPLSEDVRSSLRSGIFLFDLTRVVEELVFNSLDAGATKVSVFVCVRSCHLKVVDDGVGITRDGLMLVGERYATSKLLSLADLNDTSGSFGFRGEALASISEVSLLEILTRTFGRANGYRKVLKGCKCLYLGIDDDRKEVGTTVVVRDLFHNQPVRRKYMQSSNILYTVPYSEGELLCTHSSSSPLSLLTSGFGVEVSSSLHEFQDQDDFIKLSGYISSPCNSFTLKALQYIYINSQFTSKGPIHKLLSQLAIRFEHLDSQKAGDKFQNKKRSRSQAYPAYILNLLCPRSLYDLTFEPSKTSVQFKDWASILNFIENAIKKFWGKNITHGESSNATHVEQAAQPCKEIDNVILAEADVVDCGNQQSKEFIDLFFSTSDKLAEDDHCLSDGQVTRSSLGYLPMDAAKFKQKQNKRDFLCQTGYSSFSMDGSYTKGGSIVTKNNCSMWNDNNCLSGRDDFLDGGFAAGEIFNDNVSFDEPSSSKGNKFLEVDDDMLSESSQGAFHYVCCDLCNDVEIGRDFQKPFLKSCSRRGSILHEKALFANDEHEFQIDGYSPKEDLGVCSGRVENLSAHPCPEVVKNFNTSRDSVFLSRASSEEKSFPSDSCSLATQMGCPGFAEEKCFPSDSSYPELLRSERYPIFKTLLPEATAWDVDHMTGTDLDVLGGIPRCYKWGGYNRTFDDKENRCNFSCDISYSFNSDQCMRSFGNYRLYSDGPNDCNNLNFTKWPDPKTVKWPDCYDIDSNKWSDILTDESGWLCPVSCGGNYRRTSKNRIKKDHVRHPASEKNHERSRRSFSAPPFHKSRRRFNSLNQPLTMIARRPAGQTSNCALKNREADEECPQQSSSPLHSTPEEHLLLENTSIVKKKTAALGDIRQVNSDKESEWFHSLNSQSNSPFKELTSRKVEDSMDYSTKWGNCSPQIPTRDKSLDFHSQDDILDISSGFLHLAGDSLVPETISKNYLENARVLHQVDKKFIPIVAGGNLAVIDQHAADERIRLEELRQKVLSGEARTITYLDAEQELVLPEIGYQLLYSYSEHIKDWGWICNIHAQDSKSFKQNLDILNRQPTVVALIAVPCILGVNLNDTDLMEFLQQLADTDGSSTVPPSVVRVLNLKACRGAIMFGDSLLPSECSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHNQIAKLRPLIDCSNDEWHGLRRHKISVERAAQRLPISVVYGSDLEVLRSQPTDLTYGKATIDAR 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0020 1229 MobiDBLite consensus disorder prediction 779 797 - -
Lele51g0020 1229 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 118 - -
Lele51g0020 1229 Pfam MutL C terminal dimerisation domain 966 1127 IPR014790 GO:0005524|GO:0006298
Lele51g0020 1229 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22 167 IPR036890 -
Lele51g0020 1229 Gene3D - 970 1158 IPR042120 -
Lele51g0020 1229 SUPERFAMILY DNA mismatch repair protein MutL 965 1158 IPR037198 -
Lele51g0020 1229 Gene3D - 193 331 IPR014721 -
Lele51g0020 1229 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 1 1163 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
Lele51g0020 1229 SUPERFAMILY Ribosomal protein S5 domain 2-like 179 327 IPR020568 -
Lele51g0020 1229 SMART DNA_mis_repair_2 192 327 IPR013507 GO:0005524|GO:0006298|GO:0030983
Lele51g0020 1229 SMART MutL_C_2 967 1127 IPR014790 GO:0005524|GO:0006298
Lele51g0020 1229 Gene3D - 1011 1122 IPR042121 -
Lele51g0020 1229 Gene3D - 2 186 IPR036890 -
Lele51g0020 1229 MobiDBLite consensus disorder prediction 776 808 - -
Lele51g0020 1229 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 IPR014762 -
Lele51g0020 1229 Pfam DNA mismatch repair protein, C-terminal domain 196 324 IPR013507 GO:0005524|GO:0006298|GO:0030983
Lele51g0020 1229 FunFam MUTL protein homolog 3 1011 1122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0020 Lele-ChrLele51 124573 135510 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0020 51 124573 135510 Lele53g1234 53 21008539 21011223 CCT
Lele51g0020 51 124573 135510 Lele54g1206 54 17638956 17641320 CCT
Lele51g0020 51 124573 135510 Lele55g0252 55 1530731 1533410 CCT
Lele51g0020 51 124573 135510 Lele56g0904 56 7692298 7720369 CCT
Lele49g0018 49 116378 124511 Lele51g0020 51 124573 135510 hybridization
Lele50g0021 50 167248 169542 Lele51g0020 51 124573 135510 hybridization