Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1773 ATGTTCACGTTTCGACCCTTCTCGGGTGCATGCAATCTAGCAGAGACTGAGAGTGGAGAAGAAATCATCGGAAGAAGGCGAAGAGGAAGAGAGCATATATATAATCATGTCAGGGTCCAATGCAGTGGCCAATGGGTTGGCCGGTGCAGGCGGTGGCATTATTGCTCAAATCATAACTTATCCTCTTCAAACGGTACCCTACCCTCCTGCTTCTCTCTCTCTCCCCCCTACTTGCCTTTCACTTATCAAATTCAATTTCCACGGCAGGTTATTAAAAGCGAGGGGTGGAGCGGACTATACAGTGGCCTTAAGCCTTCTCTCCTTGGAACTGCTGCTTCTCAGGGCATTTACTACTACTTTTATCAAGTTTTTAAAAATAAGGCTGTGGCCATTGCTGCCGCCCGCAAAGTCAAAGGACATGCAGATGGAACCGTTGGCATGCTTGGGTGGCTTGTTGTGGCTGCTATTGCTGGGTCCTTGAATGTTTTGTCTACAAATCCAATATGGGTTATAGTGACTCGCATGCAGACACATACTCAAGCAGAAAGAAAAATTATGGAGGGAAAGAAAGAAGCTTTACGCAGAGAAGCGTCAGAAAGCAGTTCTGCCGATTCAACATTACAAGAAAAATTAGCTGAACTGGAATCTATAAAACCTCAACCATATGGAACTTTACACGCGGCAAAAGAAATTTATAGCGAGGCAGGTATTGTTGGATTTTGGAAGGGTGTCATCCCTTCTTTGATTATGGTGTGCAATCCGTCAATCCAGTTTATGATTTATGAGAGCTCGTTGAAGCAGTTAAAGGCAAAACGTGCAGCTAAGAATCAGGGGAATAAAAATGTAACTGCTGTTGAGGTCTTTCTTCTGGGAGCCTTAGCAAAACTTGGAGCTACTGTCTCAACATATCCCCTGTTGGTTGTCAAGCATCTCCAAAGAAACTATACGTTCTATGAATATTGGCCTTTAGGTACTTTTGATGCAATACTTAAAATAATCCGTTATGAGGGATTACCCGGATTTTACAAGGGGATGAGCACCAAGATAGTACAGAGTGTTTTTGCTGCTTCTGTTCTATTTATGGTCAAGGAGGAACTTGTTCAAGCTTACATGGCGACAGAAGAAATGGCTTCACTATCCTCCAAAATCCTAATGGATCTGTACCAGCCAGTTTCTAAGCGATTGAAACCCAATGTCACCCCAATCAGGAAATCGGTGAGCTCTCAGTCCAACCCCGATTCAGATGCTGACACTAATGACTCCCCTCAGTCCTCTATACTCAGTGTCAAGCAAAAATCACGTATTGAATGCAACAAATTGCTGGCCAAGTCCAAGAGGAATCTGAAAATCTGTGCCGATAGGGTCTCTAATTGGAAAGGTCATGTGAAACTGGAGGATTTGCTGGTGGAGGAGACTTGGTTGGAAGCTCTTTCAGGAGAATTCCAGAAACCTTATGCCAAGAATCTCTGCCAATTTTTGGGAAGAGAGATATACAATGGCGCGGAGGCTATCTATCCACCTTCCCATATGATTTTCAACGCTCTGAATTCTACCCCTTTTGATAAAGTTAAGGCAGTGATCCTGGGGCAGGACCCTTATCATGGACCTGGACAAGCCATGGGCCTTTCATTCTCTGTGCCTGTAGGAGTAAAGGTTCCTTCAAGTCTGGTAAATATATTTAAGGAACTCAAGCAAGACCTTGGTTGTTCAGTTCCATCTCATGGAAATCTGGAAAAATGGACTTCACAGGGTGTTCTCTTGCTTAATGCTGTTCTCACAGTCAGGAATCATCAAGCTAATTCTCATGCAAAAAAAGGTTGGGAACAGATTACTGATGCCGTTATCAAAACAATCTCACAAAAGAAGGAAGTAGTTGTGTTTCTCTTGTGGGGGAACTCTGCTCAGGAAAAATCTAGGCTGATTGATACAACGAAGCATCACATTCTGAAAGCTGCACATCCTTCTGGTTTGTCTGCAAACAGAGGGTTCTTTGGCTGCAGGCACTTCTCTAAAACTAACCAACTTCTGGAACAAATGGGGATTTCCCCCATTGATTGGGAGCTATAA 2067 0.4364 MFTFRPFSGACNLAETESGEEIIGRRRRGREHIYNHVRVQCSGQWVGRCRRWHYCSNHNLSSSNGTLPSCFSLSPPYLPFTYQIQFPRQVIKSEGWSGLYSGLKPSLLGTAASQGIYYYFYQVFKNKAVAIAAARKVKGHADGTVGMLGWLVVAAIAGSLNVLSTNPIWVIVTRMQTHTQAERKIMEGKKEALRREASESSSADSTLQEKLAELESIKPQPYGTLHAAKEIYSEAGIVGFWKGVIPSLIMVCNPSIQFMIYESSLKQLKAKRAAKNQGNKNVTAVEVFLLGALAKLGATVSTYPLLVVKHLQRNYTFYEYWPLGTFDAILKIIRYEGLPGFYKGMSTKIVQSVFAASVLFMVKEELVQAYMATEEMASLSSKILMDLYQPVSKRLKPNVTPIRKSVSSQSNPDSDADTNDSPQSSILSVKQKSRIECNKLLAKSKRNLKICADRVSNWKGHVKLEDLLVEETWLEALSGEFQKPYAKNLCQFLGREIYNGAEAIYPPSHMIFNALNSTPFDKVKAVILGQDPYHGPGQAMGLSFSVPVGVKVPSSLVNIFKELKQDLGCSVPSHGNLEKWTSQGVLLLNAVLTVRNHQANSHAKKGWEQITDAVIKTISQKKEVVVFLLWGNSAQEKSRLIDTTKHHILKAAHPSGLSANRGFFGCRHFSKTNQLLEQMGISPIDWEL 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1773 688 SMART UDG_2_a 516 676 - -
Lele50g1773 688 Gene3D Mitochondrial carrier domain 61 374 IPR023395 -
Lele50g1773 688 SUPERFAMILY Mitochondrial carrier 79 365 IPR023395 -
Lele50g1773 688 Pfam Mitochondrial carrier protein 282 371 IPR018108 -
Lele50g1773 688 Pfam Mitochondrial carrier protein 146 268 IPR018108 -
Lele50g1773 688 Pfam Mitochondrial carrier protein 87 126 IPR018108 -
Lele50g1773 688 TIGRFAM ung: uracil-DNA glycosylase 471 680 IPR002043 GO:0004844|GO:0006281|GO:0006284
Lele50g1773 688 PANTHER URACIL-DNA GLYCOSYLASE 400 688 IPR002043 GO:0004844|GO:0006281|GO:0006284
Lele50g1773 688 Hamap Uracil-DNA glycosylase [ung]. 470 687 IPR002043 GO:0004844|GO:0006281|GO:0006284
Lele50g1773 688 ProSiteProfiles Solute carrier (Solcar) repeat profile. 145 267 IPR018108 -
Lele50g1773 688 FunFam Uracil-DNA glycosylase 463 688 - -
Lele50g1773 688 SMART UDG_2 516 676 IPR005122 -
Lele50g1773 688 Pfam Uracil DNA glycosylase superfamily 521 675 IPR005122 -
Lele50g1773 688 ProSiteProfiles Solute carrier (Solcar) repeat profile. 282 369 IPR018108 -
Lele50g1773 688 MobiDBLite consensus disorder prediction 401 427 - -
Lele50g1773 688 CDD UDG-F1-like 485 686 IPR002043 GO:0004844|GO:0006281|GO:0006284
Lele50g1773 688 ProSitePatterns Uracil-DNA glycosylase signature. 524 533 IPR018085 GO:0006281|GO:0016799
Lele50g1773 688 Gene3D - 451 688 IPR036895 -
Lele50g1773 688 SUPERFAMILY Uracil-DNA glycosylase-like 468 687 IPR036895 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1773 Lele-ChrLele50 22397287 22405529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1773 88 370 Chloroplast and Mitochondria Gene Families AT1G25380 26.280 5.16e-23 99.8