Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1747 ATGGAGGCATCTTCTTCGTCCGTGGCGTCGCTATTCGGAATTAGAGGAGATCAGAATCCGATGAATCCACAGCAGCATTCATCAACTCCAACTTCGTCAACAACCGCAGCTGCACCAACCCAGAAGAAGAAGAGAAACCAGCCAGGAACACCAAGCAAGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACTTGCAACTTCACAGAAGAGGACACAACCTGCCTTGGAAACTAAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGCGTCCACCATGACCCTTCAAGAGCCCTCGGTGACCTCACCGGCATCAAGAAACACTACTCTCGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAATATGCCGTTCAGTCTGATTGGAAAGCACATTCTAAGACTTGTGGCACCAGAGAATACAGGTGCGACTGTGGAACTCTCTTCTCCAGGAGAGACAGTTTTATCACGCACAGGGCGTTTTGTGATGCACTGGCTCAAGAAAGTGCGAGACAGCCTTCCGACTTGATTAATGGGAGCCAGCTCTATGGAAGTAACAATATGGCTTTATGCTTATCTCAGGTGGCCTCCCACATCTCCGCCGGCCATGACCACAACCCCAACAATCAAACCGGCGGAGAGATTTTCCGAGCAGCAGCTGCTTCTCGGGCTCCTGGCCATTTCGACCACCTTCTCCCACCATCCTTAATCAGACCGCCGCCACCACCGCAGGTGGCGCCCAATGTTGCTTCTCCTCCGCCCTTCTTCATGCCGGAGAACTATCACCACCATGACCATCATCAGCAAAACAAGCAATTCCATGGACTCATGCAATTCTCTGATCTTCATCACAACATTAATGGTAACAATTCTCCAACATCTGGTCCTAATAACAGCACCAACCTCTTCAACCTCCCTGCATTCCTCTCCAACACCACCAACAATAACAGTTCTTTATCCGACCACTTGGGAAACAATGGCAGCGCTGCCGCCGTGGACGGCCCCAACAACTTCTTCTCCGACCAATTCCCAAGCGCCAGTGCTCCTTCTCTTTTCAGCACATCTCTTCAGAACAACAGTAACAGCAGTGGCATCCCTCACATGTCTGCAACAGCACTGCTTCAAAAGGCGGCTCAAATCGGTGCGAGTACAAGCAACAACAGCACCACCGCCTCGCTTCTCAGAAGCTTCGAAAGCTCCTCCTCCACCACCACCGGGTCCAAGTCTGATCATCACCACCACAACAGGCCTCCGCCACAGCAGCTGGTCGGAGCAAACTATGGCGCCATTTTCGGAGGGTCCTCTTCCACGAACAACGATGATCAGAACAGCAACCTTCAAGACCTGATGAACACATTCACTACTGTTGGTGGATATGAAGGATACAATCATCATCAGCATCAGTACACAAGAGACCTAAAATTGCCTGTAGGATCTGACAGGCTCACTCGAGATTTTCTTGGGGTTGGGCAGATTGTGAGGAGCATGAGCGGAGGGATTTCGCCCAGAGATCATCAGCAGCAGCAGCAGCAACAAGGGTTCATGAACTTGGGTTCTTTGGATAATCACAGAAACAATAACAACAAGAATAATAATAATGGTGCGCCGTCAGGCCAATCTTTTGGAGGAGGAGGGAATTTTCAGTGA 1695 0.5009 MEASSSSVASLFGIRGDQNPMNPQQHSSTPTSSTTAAAPTQKKKRNQPGTPSKFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPSDLINGSQLYGSNNMALCLSQVASHISAGHDHNPNNQTGGEIFRAAAASRAPGHFDHLLPPSLIRPPPPPQVAPNVASPPPFFMPENYHHHDHHQQNKQFHGLMQFSDLHHNINGNNSPTSGPNNSTNLFNLPAFLSNTTNNNSSLSDHLGNNGSAAAVDGPNNFFSDQFPSASAPSLFSTSLQNNSNSSGIPHMSATALLQKAAQIGASTSNNSTTASLLRSFESSSSTTTGSKSDHHHHNRPPPQQLVGANYGAIFGGSSSTNNDDQNSNLQDLMNTFTTVGGYEGYNHHQHQYTRDLKLPVGSDRLTRDFLGVGQIVRSMSGGISPRDHQQQQQQQGFMNLGSLDNHRNNNNKNNNNGAPSGQSFGGGGNFQ 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1747 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Lele50g1747 564 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Lele50g1747 564 Pfam Zinc-finger double-stranded RNA-binding 53 76 IPR022755 -
Lele50g1747 564 MobiDBLite consensus disorder prediction 400 462 - -
Lele50g1747 564 SUPERFAMILY beta-beta-alpha zinc fingers 54 150 IPR036236 -
Lele50g1747 564 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 524 IPR031140 -
Lele50g1747 564 FunFam protein indeterminate-domain 5, chloroplastic-like 108 187 - -
Lele50g1747 564 SMART c2h2final6 95 125 IPR013087 -
Lele50g1747 564 SMART c2h2final6 54 76 IPR013087 -
Lele50g1747 564 SMART c2h2final6 130 150 IPR013087 -
Lele50g1747 564 MobiDBLite consensus disorder prediction 400 422 - -
Lele50g1747 564 MobiDBLite consensus disorder prediction 446 462 - -
Lele50g1747 564 Gene3D Classic Zinc Finger 28 102 - -
Lele50g1747 564 MobiDBLite consensus disorder prediction 1 51 - -
Lele50g1747 564 Gene3D Classic Zinc Finger 108 187 - -
Lele50g1747 564 MobiDBLite consensus disorder prediction 533 564 - -
Lele50g1747 564 MobiDBLite consensus disorder prediction 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1747 Lele-ChrLele50 22195580 22198842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1747 41 514 IDZ Gene Family AT2G02070 45.185 3.31e-114 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele50g1747 zf-C2H2_jaz 2.6e-05 CL0361