Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1728 ATGGACCCCGACACGTGTCGCTGGGTACAAGAGTTTCTCCTCATGAGTTCCGCTCCAGATTTAATCATAAAAAATGTTTGGAATGTTTTGCCTCCCTCTGGTATCGATTCGCGGCTGCAGAAAATATTGCTTCTCAGGTCTATTCAATCGGAGGTGTCTGCGGCCTTATTTACTGAAAGCTCATTGGAATGTCTGGAGCTCATTGAAGAAATCGACAGGCTTGATGACATTGCAATCACACAAGCGATGAAGGAGGCATATTGTGCTGTTGCCGTGGAGTGCAGTCTGAGGTACCTTGAGGCCTGCCCAGAGAAGAACACCCGCGGCTTGTTTGACGATGCTGTCAATAGGATTTGGCGGGGCCGAGTTCGGCAAATGATGAAGGCGATGACGTTTGGGGAGAAGAGTTACTTATTTACGGCTGAGTTGATAGGTTGGAAGGACAACATAGAGTCTACACGTTGGGATGCAGAGGTGTGCGTGAGGTTAATGAACATGAATACCAGACGAGATGCACTCGATAAGGTTAGGGTTTATCTAGAAGAAACTAGGGCATCCATGGGCCCTTCTTTTCTTGAGTTAGCAGCTATATCGTCTGAAGACAAGGGTTTGGGAAGTTCAAGTGAGGATAAGATGGGTGACGCGGAGCCTGCTGCTGGTACACCCAATGAAGGTTGTGACAAGGGTGTTTCTGAATCTGTCTTCGTCTCTGATCAGATGAATATTTGTGAGGGAAGGTTACATTGTTCAACTAACACGACTGAGGAGGGTTTAGTTGTGCCTGATGAAAGGGCATTGGATAATGCTGCAATCTGCATGGAGAAGGCTCCAGTGGTAGGTGGGAATCAAGATAGTGAACAATCGGGAAAGAGAGTTGTGTCTTCTGATGGCGGAAATGAGGCATTGGGTGGAACTGACTTGCGTCAAAGGATAAGAAGAGAAATTCGAAAGGGTAAGCGGCCACTTGAACGCAATCATGCTGTGCCCTCTAAACGTAGAGGAGTTAAAATTATTGATGCGGAGGAAGTAAGGCAAGAAACAGTTTGCAGCAAAGATCACAATGAGTCTAATATTCAAGTTGAAAAGCTTAGGAAATCTCTCGTGTCAAGTTCTTTGGAGTTGCGAGCATTGGTGAAGGATCCTCTTCCTGATGCGTTAAATAGATCTGACACTGTAAGATCTGAATTAGCAACAAAGGATGTGAATCATGAGCCTCCTTTGGAAAACCAGAGTACAGATGAAAATGTACCAGAGCAAAATACTGCTTTAGAAAATCAGAGTACAGATGTAAATGTACCAGAGCAAAACACTTGCAGGAGCGTGGTGCTTTATAAGCCTATCGCTGATAATTCGAAGCCCATTGATGATCATTCGAAGAAACGTTCTTCTGCTAGTTGCAGTAATGTTCGACATCCGAGCAGCTGGATGGAACGAAATAGCACTGCCCATACTTATGAGTGGGATGATGCATTTGATGTCTTGCCTGGGGGAGGCCTTAAAAGGAGGAGGAAAAGGTGGAGTCTTGAAGAAGAGGATGCACTAAGGGCTGGGGTAAAGAAGTTTGGCAAAGGGAACTGGAAGTCAATTCTAAGATTTTACAGAGAGCTATTTGCAAAGGCAGGAAGAACAGAGGTGGATTTGAAGGATAAATGGAGAAATCTGACACGGGGATCCTAG 1677 0.4526 MDPDTCRWVQEFLLMSSAPDLIIKNVWNVLPPSGIDSRLQKILLLRSIQSEVSAALFTESSLECLELIEEIDRLDDIAITQAMKEAYCAVAVECSLRYLEACPEKNTRGLFDDAVNRIWRGRVRQMMKAMTFGEKSYLFTAELIGWKDNIESTRWDAEVCVRLMNMNTRRDALDKVRVYLEETRASMGPSFLELAAISSEDKGLGSSSEDKMGDAEPAAGTPNEGCDKGVSESVFVSDQMNICEGRLHCSTNTTEEGLVVPDERALDNAAICMEKAPVVGGNQDSEQSGKRVVSSDGGNEALGGTDLRQRIRREIRKGKRPLERNHAVPSKRRGVKIIDAEEVRQETVCSKDHNESNIQVEKLRKSLVSSSLELRALVKDPLPDALNRSDTVRSELATKDVNHEPPLENQSTDENVPEQNTALENQSTDVNVPEQNTCRSVVLYKPIADNSKPIDDHSKKRSSASCSNVRHPSSWMERNSTAHTYEWDDAFDVLPGGGLKRRRKRWSLEEEDALRAGVKKFGKGNWKSILRFYRELFAKAGRTEVDLKDKWRNLTRGS 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1728 558 ProSiteProfiles Myb-like domain profile. 498 555 IPR001005 -
Lele50g1728 558 MobiDBLite consensus disorder prediction 449 472 - -
Lele50g1728 558 Gene3D - 499 557 - -
Lele50g1728 558 PANTHER MYB TRANSCRIPTION FACTOR 1 556 - -
Lele50g1728 558 MobiDBLite consensus disorder prediction 279 303 - -
Lele50g1728 558 Pfam Myb-like DNA-binding domain 503 554 IPR001005 -
Lele50g1728 558 SMART sant 502 557 IPR001005 -
Lele50g1728 558 CDD SANT_TRF 504 556 - -
Lele50g1728 558 MobiDBLite consensus disorder prediction 404 435 - -
Lele50g1728 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 500 558 IPR017930 -
Lele50g1728 558 MobiDBLite consensus disorder prediction 202 226 - -
Lele50g1728 558 MobiDBLite consensus disorder prediction 395 435 - -
Lele50g1728 558 SUPERFAMILY Homeodomain-like 501 555 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1728 Lele-ChrLele50 22061944 22065196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1728 504 554 Single Myb Histone (SMH) Gene Family AT1G15720 58.824 6.90e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele50g1728 Myb_DNA-binding 1.1e-09 CL0123