LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele50g1726	ATGTCTGCTGCTTCCTCGTCTTCACCGTTCTTCGGAATCAGAGAAGAAAACCCAATTCATCAGGTGACACAACAGCAACACCATCAACAATCCTCCACAGCTGCTTCCTCGACTGCTCCAAACACTGCAGTTCCTCAAAAGAAACGAAGGAATCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCTCTATCTCCAAAGACATTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACTTGCAACTTCACAGAAGAGGACACAACCTTCCATGGAAGCTCAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGCGTCCACCATGACCCTTCAAGAGCCCTCGGTGACCTCACCGGCATCAAGAAACACTACTCTCGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAATACGCAGTTCAGTCTGATTGGAAAGCACATTCTAAGACTTGTGGCACCAGAGAATACAGATGCGATTGTGGAACTCTCTTCTCCAGACGTGACAGTTTCATCACTCACAGAGCCTTCTGTGATGCCCTAGCTCAGGAGAGTGCGAGGAACCCTACAAGCTTAGACCCTATGGCTGCTCATCTCTATGGCTCAAACCACCATATGAGCTTAGGCTTATCTCATCATCAGCAACTTGGTTCCTCAATGTCCCACCATCGTCTTCATCCTCAAAACCTCCATGCTTCTTCTGCAACAGCAAACCCTAATTCCAGTCTCCAGCGTCTAGGCAATGGCAATAATAATGCTACAAAATTTGAGGCTTCTTCCTTTATCTCACCATCTTCATCATCAAACCCGTCAATGCCTAATCATTCCTCGGCTTTCTTCATCACAGATCCTATGCCTAATCAAGGATTTCATCAGCAGCAAGCAGCGGCATTTTCGGCTTCAAGCAAGGCATCGTCGTCTTTACATGGTCTCATGCGGCTTCCTGATCTCCAAGGAAACCCGAGTAATAATGTAGGGTTCTTCGCTAATAACAGTATCATCACTGATCAGTTCAGTAACGTCCCTTTTGGTGATCATCAGTCTACAGGTTTGCTCTTCAGTAACTCAATGCAACACGCCGACGAGGTTTCTCCGGCGGCCGCGCATATGTCTGCTACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCGACCACGACCACGTCGAATAATAATAGTTCTTCCTCGTTACTCAGAGGAATGGGTGGAATTTCATCAACAAACAATAACAATGGGGCTAAATCCGATAATATTGTTGCTTTTGGGAGTGACAGTACAGAAAACGACCACCACCACCATCATCTTCGAGGGTTGATGAACTCTCTTGTTAATGGGAATGCTTCGATATTTGGAAATGTGCAAGCGGGGAACGATCATCATCATCATCAGGCTAATAATCTGCAACAAAATCTGGGTACTGTGAGCTTCGGAGGTTCTGATAAGTTAACGTTAGACTTTTTAGGTGTCGGAGGAATGGTGAGGAACATGAACGGTGGATTTTCACAGAGAGAACAACCTCAACAACAACAACAACATGGAAGCATGAACATGAGTTCTTTGGAACCTGAACAACAGGCAAACCAAACTTTCAGAAGCACGACGCTGCAATGA	1677	0.4597	MSAASSSSPFFGIREENPIHQVTQQQHHQQSSTAASSTAPNTAVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARNPTSLDPMAAHLYGSNHHMSLGLSHHQQLGSSMSHHRLHPQNLHASSATANPNSSLQRLGNGNNNATKFEASSFISPSSSSNPSMPNHSSAFFITDPMPNQGFHQQQAAAFSASSKASSSLHGLMRLPDLQGNPSNNVGFFANNSIITDQFSNVPFGDHQSTGLLFSNSMQHADEVSPAAAHMSATALLQKAAQMGSTTTTSNNNSSSSLLRGMGGISSTNNNNGAKSDNIVAFGSDSTENDHHHHHLRGLMNSLVNGNASIFGNVQAGNDHHHHQANNLQQNLGTVSFGGSDKLTLDFLGVGGMVRNMNGGFSQREQPQQQQQHGSMNMSSLEPEQQANQTFRSTTLQ	558

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele50g1726	558	ProSitePatterns	Zinc finger C2H2 type domain signature.	78	98	IPR013087	-
	Lele50g1726	558	Gene3D	Classic Zinc Finger	130	209	-	-
	Lele50g1726	558	MobiDBLite	consensus disorder prediction	403	454	-	-
	Lele50g1726	558	FunFam	protein indeterminate-domain 5, chloroplastic-like	130	209	-	-
	Lele50g1726	558	ProSiteProfiles	Zinc finger C2H2 type domain profile.	76	98	IPR013087	-
	Lele50g1726	558	MobiDBLite	consensus disorder prediction	519	558	-	-
	Lele50g1726	558	MobiDBLite	consensus disorder prediction	1	61	-	-
	Lele50g1726	558	MobiDBLite	consensus disorder prediction	520	558	-	-
	Lele50g1726	558	FunFam	protein indeterminate-domain 12-like	55	123	-	-
	Lele50g1726	558	Pfam	Zinc-finger double-stranded RNA-binding	76	98	IPR022755	-
	Lele50g1726	558	PANTHER	SERINE/THREONINE-PROTEIN KINASE RIO	24	531	IPR031140	-
	Lele50g1726	558	SUPERFAMILY	beta-beta-alpha zinc fingers	75	172	IPR036236	-
	Lele50g1726	558	MobiDBLite	consensus disorder prediction	403	446	-	-
	Lele50g1726	558	MobiDBLite	consensus disorder prediction	1	53	-	-
	Lele50g1726	558	MobiDBLite	consensus disorder prediction	253	308	-	-
	Lele50g1726	558	SMART	c2h2final6	117	147	IPR013087	-
	Lele50g1726	558	SMART	c2h2final6	76	98	IPR013087	-
	Lele50g1726	558	SMART	c2h2final6	152	172	IPR013087	-
	Lele50g1726	558	Gene3D	Classic Zinc Finger	55	124	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele50g1726	Lele-ChrLele50	22049181	22053181	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele50g1726	71	519	C2H2 Transcription Factor Family	AT2G02080	50.426	3.98e-122	365

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Lele50g1726		zf-C2H2_jaz	3.4e-05	CL0361