Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1710 ATGGCTGCGTCCAAGGCGTTAATGGCTTCCTTAACCCATCTTCGTCCACTAACATGCGCCGCTTCTGTATCAACATCTTATCCTACACGACTCGTGCCCCTACCTCCTGACCTCATCAAGTGGGTTCGGAAACAAGGTGGTTTCGTGCATCAGGCGGTGATGATAGCACAAGATGACTTCAAAGACCTCGGGCTTATTGCTTCTGAAGAAATCCCTAGAGGCACTGACCTCATTTTTCTTCCACACCACGTACCCTTGAAGTCCGGGTCTCTTGAATCGAACCATGAAGATGAGCTTCATTCCGTGTTAGTTAATTTAGCCCGCCATATTCCTGAGGAACTATGGACTATGAAACTGGGTTTGAAGCTTCTGCAAGAAAGAGCGAAAGTGGGATCGTTTTGGTGGCCATATGTCAGCAATCTCCCAGAAACATACAGTGTACCTATCTTCTTTCCAGGGGAGGATATAAAGAACTTGCAGTACTGCTTCACCAGGTGTGCCCTTGACAATCTGAAACCAGATAAGCATCCTTTTGATGGACAAGAAGTAGATGCATCTGCACTTGGATGGGCAATGTCAGCAGTGTCATCTAGGGCATTCCGGTTATATGGTGACAAGCATCCAGATGGGACCCACACAGACATACCAATGATGCTTCCTCTAATTGATATGTGCAACCATAGTTTTAATCCAAACGCCCGAATTGTTCAGGAAAAAGATACTGGTACAATGAAGATGCAAGTGGTGGCTGATCCAGAAATAAGACAAGATGATCCTTTATTACTCAATTATGGCTTTTTAAGCAATGATTTTTTTCTTCTTGATTATGGATTTGTGGTACCCTCAAATCCTTATGACTGTATTGAGCTCAAATATGATGGTGCATTTTTGGATGCTGCAAGCATGGCGGCTGGGGTTTCTTCTCCCAGCTTCTCAGCACCTGCTTCGTGGCAGGAACAAGTTTTATGTCAACTAAATCTAGCTGGAGAAGCTTCTGATCTCAAGGTAAGCTTAGGTGGTCGAGAAATAGTAGGTGGCCGGCTATTGGCAGCACTGAGAGTACTTCTTGCGAGTGACATGGAGGCTGTGCAGAACTGTGACCTTAACACTCTCAAGTCTCTAGCTGCTGAAGCTCCTCTTGGTATTGCAAATGAAGTGGCAGCCCTGCGAACAACAATTGCTTTGTGTGTCATTGCATTGGGGCACTTCCCCACCAAGATAATGGATGATGAGTCATTATTGAAACCGGGTGCTCAGTGGGGATTGAATCTAGTATTGGCAATGAGTGTTGGTGAAGTTGACAAATTCCATGTGTTAGGGTATGAGATAATAGATGAGTATGTCCCATCAGCTTGGCAGGTGCTTCTCTTGGAGGAACACCTGGAAGGAGGATCTCCTTGA 1401 0.454 MAASKALMASLTHLRPLTCAASVSTSYPTRLVPLPPDLIKWVRKQGGFVHQAVMIAQDDFKDLGLIASEEIPRGTDLIFLPHHVPLKSGSLESNHEDELHSVLVNLARHIPEELWTMKLGLKLLQERAKVGSFWWPYVSNLPETYSVPIFFPGEDIKNLQYCFTRCALDNLKPDKHPFDGQEVDASALGWAMSAVSSRAFRLYGDKHPDGTHTDIPMMLPLIDMCNHSFNPNARIVQEKDTGTMKMQVVADPEIRQDDPLLLNYGFLSNDFFLLDYGFVVPSNPYDCIELKYDGAFLDAASMAAGVSSPSFSAPASWQEQVLCQLNLAGEASDLKVSLGGREIVGGRLLAALRVLLASDMEAVQNCDLNTLKSLAAEAPLGIANEVAALRTTIALCVIALGHFPTKIMDDESLLKPGAQWGLNLVLAMSVGEVDKFHVLGYEIIDEYVPSAWQVLLLEEHLEGGSP 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1710 466 Pfam Rubisco LSMT substrate-binding 313 417 IPR015353 -
Lele50g1710 466 SUPERFAMILY SET domain 36 283 IPR046341 -
Lele50g1710 466 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 37 415 - -
Lele50g1710 466 Gene3D - 306 432 IPR036464 -
Lele50g1710 466 Pfam SET domain 64 265 IPR001214 GO:0005515
Lele50g1710 466 SMART set_7 51 271 IPR001214 GO:0005515
Lele50g1710 466 ProSiteProfiles SET domain profile. 51 265 IPR001214 GO:0005515
Lele50g1710 466 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 275 430 IPR036464 -
Lele50g1710 466 CDD SET_LSMT 52 279 - -
Lele50g1710 466 Gene3D set domain protein methyltransferase, domain 1 18 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1710 Lele-ChrLele50 21928195 21933381 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele50g1710 SET 2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1710 50 21928195 21933381 Lele50g1710 50 21928195 21933381 ECH
Lele50g1710 50 21928195 21933381 Lele51g1148 51 7588736 7592566 hybridization
Lele50g1710 50 21928195 21933381 Lele52g1671 52 20336705 20340496 hybridization