Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1704 ATGGTTGCTTTCCGTGCTCTCAGATCTTCAAAGCTCATCTCATGGAAACCGACTGGCAGGCTTCAGCAAACCTTAGTAGGTTGTGTTGAGCGGCGAGGTAATACTTTACACTCTGGAAAGGCTTCAGTAGTCAAACTCTGTCCTGGATTTGTAGGAGAAGGGAGGTATTTCGATTTCCGGTCCAATTCGATAGCTGCGTTGATTGATTTTGCTCACGTGTCACCTCTCTGCACCACTTTGTGTAAAGATGGTTTCAGAGTACGAACTGTTGAGCACTTGCTTTCTGCTTTGGAGGCGACTGGAGTTGATAATTGCAGAATTGAGATAGAAAATGTGGATTCTGAAGGAGATTGTGCTGAGATCCCTATATTTGATGGTTCAGCTACTGAATGGGTAGCAGCAGTGGAAGAAGTTGGTTTAAAGGCGGCAACTGATCACCATGGCAACAGTTGTGAAAAATTAGCTCCCCACCTGAATGAACCAACGTACGTTTTTAGGAATGATTCTTTTGTTGCCGCATTTCCTTCAACAATGGTTCAAATAACCTATGGAATTAACTTTCCACAGGCAAGTGCTATTGGATGCCAGTGGTTTTCGACCCCCTTGGACGATTTACTGTATTCCAAACAGATAGCTTTGTCAAGAACCTTCTGCATTTACGAGGAGATTGAACAAATGCGCAATGCTGGACTGATTAAAGGAGGTAGTCTAGAAAATGCCATTGTTTGCAGTGCCCATAATGGTTGGTTGAATCCCCCTTTGCGTTTCGATGATGAACCATGTCGCCATAAGGTCCTAGATCTTATAGGAGATCTTTCTCTTTTTGCTCAGTTTGGGCATCAAGGAGTTCCAGTGGCACACGTTGCTGGTCATGCATTGCATGCTGATCTGGTACGCCGTTTAATAGGAACGACTTGA 918 0.4423 MVAFRALRSSKLISWKPTGRLQQTLVGCVERRGNTLHSGKASVVKLCPGFVGEGRYFDFRSNSIAALIDFAHVSPLCTTLCKDGFRVRTVEHLLSALEATGVDNCRIEIENVDSEGDCAEIPIFDGSATEWVAAVEEVGLKAATDHHGNSCEKLAPHLNEPTYVFRNDSFVAAFPSTMVQITYGINFPQASAIGCQWFSTPLDDLLYSKQIALSRTFCIYEEIEQMRNAGLIKGGSLENAIVCSAHNGWLNPPLRFDDEPCRHKVLDLIGDLSLFAQFGHQGVPVAHVAGHALHADLVRRLIGTT 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1704 305 SUPERFAMILY Ribosomal protein S5 domain 2-like 21 142 IPR020568 -
Lele50g1704 305 Gene3D lpxc deacetylase, domain 1 20 147 IPR015870 GO:0008759|GO:0009245
Lele50g1704 305 TIGRFAM lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 22 302 IPR004463 GO:0008759|GO:0009245
Lele50g1704 305 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 22 302 IPR004463 GO:0008759|GO:0009245
Lele50g1704 305 Gene3D lpxc deacetylase, domain 2 157 305 IPR011334 GO:0008759|GO:0009245
Lele50g1704 305 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 2 303 IPR004463 GO:0008759|GO:0009245
Lele50g1704 305 SUPERFAMILY Ribosomal protein S5 domain 2-like 161 302 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1704 Lele-ChrLele50 21881631 21886214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1704 2 301 Carbohydrate Esterase AT1G25054 61.639 3.32e-137 389