Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1688 ATGGTAAAATCGTCCGATAATGGTTTTGGTTCTGTAGCGCCTTTCCTGAAAAAATGTTATGAGATGGTGGACGATGAGTCAACCGACTCGCTCATATCCTGGAGCAAAAGCAATGACAGTTTTATCATCTGGGACATGACTGAGTTCTCCTTGCGTTTGCTTCCCAAGTCTGAGTTTCGGATTTGGAAAGTGAAGGAAGGGTGCCTCTTTCCCGATATAGAGAAAACCTCAAACCTTTCAGACCTTAGCATCGTAATGATGCTCCATCACCTGACCCTAGATGATCTACAATATTCTTTATACCCATTGAGGATACCTGGGGATGATTTTGATGCTGCAAGAATTGTTGCCCGCTCTAGAAATGTCACAAACTCAACAAATCGCCATGAAATGGACAAATGGCAACAATTGCACATGACATGTCTGAAAACTGATACAGATCGCTGGGAATTTGCCAACGATGACTTCATCAGAGGTCAAAAGCACTTACTGAAGAATATATTGAGAAGAAAACATCCACATGTTGCAGATCAGCGAAAGCCATTGGAGCAGCAAGAGAATCGTGATGTGCCTTCTCAAGAAGTTAAAAACCATGACCTATGGAAAGAAGTCGAGAATTTGAAAATCGATAAAAATGCACTCGCACAGGAGTTGGTTAAACTTAGGCAGCACCAGGAATCATCTAAGAACAAGTTGCTGCTTCTGACTAATCGGCTTCAAGGAATGGAAAATAATCAGCAACAGATGTTATCATTCTTAGTCATGGCCATGCAAATCCCTGGTTTCATGGTTCAGCTGCTTCAGCCCAAGGAAAACGGTTGGCTTGTGACCGAGACAAGCAATATGTTGGAACACAGTGCTTCTGATGGGATGATCATGAAGTATCAACAGCCATTGAGTGAAAAATTGAAGCCTTTAGTTTCACCATCTAGTGTTTCCCATGAGCAACCGGTGCCCAGTCTCTGTACCGATGGGTTGAAAGATTATTTCATCAATTCCGACTTCTTGAAGGTACTCATGGATGAAAAAATGTGTCAAATAGATCATCATTCTCCATTTATTCTACCGGATTCACCCCATGATAATAATGCCTGGGAACAGCTTCTTTTAGGCAGTCCCTTCACTGAAAATGAAGATTCAAATCTGGAAAGTGACAACAATGGAATGGAGATCGAGCCTGCTATATGCGAAACAATGTTCGATAAGTTCCAAAATTGTGTTGGGTTGATTCCATAA 1236 0.4167 MVKSSDNGFGSVAPFLKKCYEMVDDESTDSLISWSKSNDSFIIWDMTEFSLRLLPKSEFRIWKVKEGCLFPDIEKTSNLSDLSIVMMLHHLTLDDLQYSLYPLRIPGDDFDAARIVARSRNVTNSTNRHEMDKWQQLHMTCLKTDTDRWEFANDDFIRGQKHLLKNILRRKHPHVADQRKPLEQQENRDVPSQEVKNHDLWKEVENLKIDKNALAQELVKLRQHQESSKNKLLLLTNRLQGMENNQQQMLSFLVMAMQIPGFMVQLLQPKENGWLVTETSNMLEHSASDGMIMKYQQPLSEKLKPLVSPSSVSHEQPVPSLCTDGLKDYFINSDFLKVLMDEKMCQIDHHSPFILPDSPHDNNAWEQLLLGSPFTENEDSNLESDNNGMEIEPAICETMFDKFQNCVGLIP 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1688 411 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 296 IPR027725 -
Lele50g1688 411 Gene3D - 9 171 IPR036388 -
Lele50g1688 411 SMART hsfneu3 11 170 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele50g1688 411 MobiDBLite consensus disorder prediction 176 194 - -
Lele50g1688 411 SUPERFAMILY "Winged helix" DNA-binding domain 11 56 IPR036390 -
Lele50g1688 411 Pfam HSF-type DNA-binding 15 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele50g1688 411 SUPERFAMILY "Winged helix" DNA-binding domain 127 170 IPR036390 -
Lele50g1688 411 Coils Coil 204 224 - -
Lele50g1688 411 MobiDBLite consensus disorder prediction 174 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1688 Lele-ChrLele50 21794978 21798186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1688 1 373 HSF AT1G67970 39.108 8.56e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele50g1688 HSF_DNA-bind 2.4e-08 CL0123