Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1687 ATGCACAGTACTTCACAGTACATTGCTTTCACCTTTTATCTAGAGAGAGAGATAATGGAGGGTGGTAGAATTGGGAGAGAAAATGTGGGAGAGAAACTAACAAGGGATGATGATGATAATGATCATGAGGTTCTGAAAAAGATGATTTCCAGTCATCCTCTTTATGGACTTTTGATTGAATCTCACTTCAACTGTTTGAAGGTGGGGTTAGGAGAATTTGGAGAAGAGTTTGATATAACAGATGTTGCTGCATGTAAGCACAAGGCAAATAATTCTGAGCTCAAAACTACAGCCACAACTCCAAGTTCTACAGAACTTGATCACTTCATGGAAGCATATTGCATGGCACTTAGCAGCCTGAAAGAAGCGATTGAAGAACCAACAAAAGAAACAAGAGCGTTCATGAATTCAATGCACGTTGAGCTGAAGGAACTATGTAAGCCGAATCATAAGGCACAACAAGATGCTGCTATAGAGTGCAGCAGCAAGAAGAATCTTTGA 501 0.3992 MHSTSQYIAFTFYLEREIMEGGRIGRENVGEKLTRDDDDNDHEVLKKMISSHPLYGLLIESHFNCLKVGLGEFGEEFDITDVAACKHKANNSELKTTATTPSSTELDHFMEAYCMALSSLKEAIEEPTKETRAFMNSMHVELKELCKPNHKAQQDAAIECSSKKNL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1687 166 Pfam KNOX1 domain 45 69 IPR005540 GO:0003677|GO:0005634
Lele50g1687 166 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 31 149 - -
Lele50g1687 166 SMART KNOX1_2 43 85 IPR005540 GO:0003677|GO:0005634
Lele50g1687 166 Pfam KNOX2 domain 104 146 IPR005541 GO:0003677|GO:0005634
Lele50g1687 166 SMART KNOX2_2 96 147 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1687 Lele-ChrLele50 21789616 21791118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1687 40 147 Homeobox Transcription Factor Family AT4G08150 29.464 7.86e-12 60.5