Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1676 ATGGCGTTGTTCATGAAAATGTGCTTCCGTGCAGTCCAGCAACTTTGTAGGGATGTAGGAGAGAATGTCGCTGATCCACGGGGTTCTGCTCAAATAGAAAATTGGAATACCTTGTTTGTTCCTTTTGAGGGTAGGCTAGGCCATCGGATGATATTAATGGATCAGGGCTTTCTGGGAATCCTCAAACTTCGTATAAAAAAAGGAATCAACCTTGCAGTACGTGACACTCGTACAAGTGATCCTTACGTTGTTGTCACCATGCAAGAACAGAAACTGAGGACTAAGGTTGTTGAAGATGACTGCAATCCTGAGTGGAATGATGAGCTGACATTGTATATAAAGAGAATCGATGCTCCAATCATTATAACAGTGTTGGACAAAGACACGTTCACAGAGGACGATCCAATGGGGGAAGTAGAGTTAGACATAAAGCCATTGCTGGAGTGTGCGAAGATAAACAAGACGATGGCGGAAGAACTTGAAGAAGGGATTGTGCTGAATAGAGTTAAACCCAGCGACAATAACTGTCTCTCTGAACAGAGCTTGTGCACTTGGATTGACGGAGCTTTCCGACAAGAAATGCATCTCAGATTGAACAAAGTTGAGAAAGGTGAACTACTCGTCGAAATTGAGTGGACTGATCAAGGTTGTCTCGGATTATCAAACGTTGACTTTTAA 678 0.4292 MALFMKMCFRAVQQLCRDVGENVADPRGSAQIENWNTLFVPFEGRLGHRMILMDQGFLGILKLRIKKGINLAVRDTRTSDPYVVVTMQEQKLRTKVVEDDCNPEWNDELTLYIKRIDAPIIITVLDKDTFTEDDPMGEVELDIKPLLECAKINKTMAEELEEGIVLNRVKPSDNNCLSEQSLCTWIDGAFRQEMHLRLNKVEKGELLVEIEWTDQGCLGLSNVDF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1676 225 ProSiteProfiles C2 domain profile. 41 156 IPR000008 -
Lele50g1676 225 SMART C2_3c 60 155 IPR000008 -
Lele50g1676 225 Gene3D C2 domain 58 217 IPR035892 -
Lele50g1676 225 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 58 144 IPR035892 -
Lele50g1676 225 Pfam C2 domain 59 154 IPR000008 -
Lele50g1676 225 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 58 214 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1676 Lele-ChrLele50 21718180 21721276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1676 91 221 C2H2 Transcription Factor Family AT1G70790 46.212 3.08e-36 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1676 50 21718180 21721276 Lele50g1676 50 21718180 21721276 ECH
Lele50g1676 50 21718180 21721276 Lele25g1279 25 8618277 8620385 ECH
Lele50g1676 50 21718180 21721276 Lele26g1289 26 8519685 8521573 ECH
Lele50g1676 50 21718180 21721276 Lele27g0805 27 16119245 16121350 ECH
Lele50g1676 50 21718180 21721276 Lele28g1280 28 8554688 8556882 ECH
Lele50g1676 50 21718180 21721276 Lele52g1632 52 20117112 20119412 hybridization