Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1668 ATGAATTCTGAGAATCTTGCTATCAATGGTTTAGAAGACACATCAATTGAAGATTATCCCATAGAAGTTATCTTTCCAATGGATGAAGGTGTTCCACCATCTCCCCCAAATAAGAGTTATTGTGAATGTTTTGCCAATGGGAAATTATGTGGCCAAGATTGTAGCTGCGAAGGTTGCTTCAACACATTGGAACATGAAACCACAAATATCAGGGAGACAAGGAACAAGATCCTAAGTCATAATCCATCGGCATCTGCTAGTGGATACCACACACTCACTCATAAAAGCTTATACAGATCTACAAATCAGAAGGCAATGGATGGAGCAGCTGCCCCAATGGCTCAATTGCTAGCCGGCCAAATGGCTGCCATGGTTCAACCGAGAGTGATTCCATTTGTTGCATCGGGTAACATCCCTCTGTTGTCGGCCCTCCAAATGGCCTCCATGGCTCAATCGCTAGTGAATCCATTTGCTACATCAAACAACATCCCTCAAATGGCTACAATGGCCCAAATGCAAGTAAATCCATTTACTCCAACAAGCAACATCATCCCCCCACCGTCGACTGTCCAAAGGTTAGCCATAGCTCAACTAGGAGCGAATCCATTTGCTCCAGCAAGCAACATCATCCCTCCACCGTCAGTCATCTAA 651 0.4455 MNSENLAINGLEDTSIEDYPIEVIFPMDEGVPPSPPNKSYCECFANGKLCGQDCSCEGCFNTLEHETTNIRETRNKILSHNPSASASGYHTLTHKSLYRSTNQKAMDGAAAPMAQLLAGQMAAMVQPRVIPFVASGNIPLLSALQMASMAQSLVNPFATSNNIPQMATMAQMQVNPFTPTSNIIPPPSTVQRLAIAQLGANPFAPASNIIPPPSVI 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1668 216 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 38 62 IPR005172 -
Lele50g1668 216 SMART CXC_2 37 65 IPR033467 -
Lele50g1668 216 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 38 84 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1668 Lele-ChrLele50 21682821 21687225 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1668 38 86 CPP Transcription Factor Family AT3G22780 53.061 5.41e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lele50g1668 TCR 1.9e-07 No_clan