Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1643 ATGGACGACCAAGTTGTTCAGCGCGTCTTCCATGAAGGAGGCCGCGACTACTATCAACAACAGCCTTCTACATCGTCATCTTCCTCCTCCATACTTCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGCTATTACTTGTTAGTAAAATCTATCCAAGAACTTCGAGAGAAAAAGGACGGTGTTGTTACAATTGGCATTGGTGGTCCTAGTGGTTCTGGTAAATCAAGCTTAGCAGAGAAGGTGGCATCTGTTCTTGGTTGCACTGTTATATCAATGGAGAATTATCGCAATGGAGTTGACGAAGGGAATGATTTGGATTCTATAGACTTTGATGACTTGGTCAAGAATCTTGAGGATTTGACCAAAGGCAATGATACACTGATTCCTGTGTTTGACTATCAACAAAAGAGAAATCTTGGATATAAAGCAATAAAGAGTGCTTCATCAGGGGTGGTAGTAGTTGATGGTACATATGCTCTACACGCGAAACTGCGGTCTTTGCTAGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCTTGCTTTCTAAAGTTCGCTATGATATTGGAGATTCTTGTTCACTGGATTACCTTATTGACAGTATTTTCCCATTGTTTCGGAAGCACATTGAACCAGATCTTCATCATGCGCAGATCAGAATTAATAACAGCTTTGTTTCATCATTTAGAGAAGCCATCTACAAGGTGAAATGCAGAAGCGAGTCTCCTGATGGACATTTGGGTTCTGGCTTTCAACAAGATGAGGCCCAAACAGACAATTGTATAGAGATGTATCTTAGACCTCCTTCAGCTAGTGAAGAAGCAACTATTAATGATTGGATCAAGGTGCGGCAATCTGGAATTAGATATTATCTTTCCCTTGGTGACCAGAGGATTGTTGACAAAAATTTCATTATCAGACCAAAGGCTGAGTTTGAGGTTGGGCGAATGACATTAGGGGGTTTGCTTGCTCTGGGTTACTCTGTTGTTGTTAGCTATAAACGTGCATCTACAACTGTCAGTAATGGCAATGTTTCTGTGTCTTTCGAAACCATTGATGCTCTGGGTGAGACATACATGGTGCTGAGGGGAACAAATAGGAAAACCGTTGGAACAGAAGCATTAAAGCTGGGGGTAAGTGGCCCTTGGATCACTAAATCATACCTGGAAATGATTCTTGAGAGAAAAGGTGTACCTCGTCTCAGTACACCACCACTCGTGTCTAATACATCTATGTCTGGTAATCCAGAAAGAGAAATTGTTGCACCAAAGCCAATCCGGGTTACCCCTGACCTTGTAACTGGAGTTGAGGATTTATCTCAGCCATGGACTCGATCCCCAAGAAAGTTCAAAATGGAACCTGTCATAGCAACTTGGTGTTTTATATCTTCAGATTCATCTCTGACGGGCAACACAGTACTAGCAACCACAGATCCTTCATCTTTCAGGGATACTATGAGGCTTGCTCCAATGCCTGATTCCTATGACCTGGATAGGGGATTGCTTTTGGCCGTTCAAGCAATACAGGCTTTGTTGGAGAAGAAAGGAGTTCCAGTCATAGTTGGAATTGGAGGTCCAAGTGGGTCTGGAAAGACTAGTTTGGCCCATAAAATGGCAAATATCATTGGTTGTGAGGTAGTTTCTCTGGAAAGCTATTATAAACGAGTAAAGGATTTTAAATATGATAACTTCAGTTCACTTGATCTGGCTTTGCTATCAAAGAATATTGATGACATACGAAATGTTCGGAGAACAAAAGTTCCTATATTTGACCTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCCGAAGATTGTGGAGTGATTATATTTGAAGGGGTTTATGCTTTGCATCCTGATATCAGAAAATCTCTTGACTTGTGGGTTGCTGTTGTGGGAGGTGTTCATTCACATTTGATATCTCGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTATGTCCCAAAATGAGATTATGATGACAGTATTTCCTATGTTCCAGCTGCACATTGAACCACATCTTGTCCATGCACATCTTAAGATAAGAAATGACTTTGACCCTGTTCTTTCCCCTGAGAGTTCATTGTTTGTATTGAAGAGTAACAAAAAGGTAGCTTATCAAGATATTCTTACGATTCTTGATCCAGCAAAATTCTGCAGTTCTGTTCAGAAATTCATTGATATATATTTAAAGCTTCCTGGGATCCCATCTAACGGACAGTTGACAGAGGGTGATTGTATAAGAGTCAGAATATGTGAAGGAAAATTTGCTTTGTTGATACGTGAGCCTATTAGAGAAGGAAGCTTCATCATTCAGCCGAAAGTGGATTTTGATATTGGCATTAGTACAGTTGCAGGTCTTCTCAATCTTGGGTATCAAGCAGTAGCTTATATTGAAGCATCTGCGTTCATTTACCAGGATGGCAAGATTCTGATTGAGGTTGACCATCTACAAGACGTCTCCGGTCCATACATTCAGATTAAGGGCGTTGATAAGGATGCTGTGGCAGCAGCTGGTTCAATGCTTAAATTGGATGGTTCATATACTACTAAAAGTTATCTTCAAATAATTTTGGAAAACCTACCTGCACTGGAAAGGACTTTTGGTGGCATCCACTCTCAACAGTCTGCGAGGATGCAAGAAATTGTTGAGTTTATTCAATCTCAGGGGAGCAGCTTAGCATCAGAATGCTCACCAAGCAGAGTGGCGTCCCCAATTGAAGGGATGATAGAGGAGATGCAATCCAGGATTAGAAGGCTAGAACGGTGGCTTACTGTAAATACGGTTTTATGGACATTTCTCATGTCTGCTCTGGTGGGTTATTCACTATATCAAAGGAAGCGTCAATGA 2868 0.4125 MDDQVVQRVFHEGGRDYYQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGVVTIGIGGPSGSGKSSLAEKVASVLGCTVISMENYRNGVDEGNDLDSIDFDDLVKNLEDLTKGNDTLIPVFDYQQKRNLGYKAIKSASSGVVVVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESPDGHLGSGFQQDEAQTDNCIEMYLRPPSASEEATINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYSVVVSYKRASTTVSNGNVSVSFETIDALGETYMVLRGTNRKTVGTEALKLGVSGPWITKSYLEMILERKGVPRLSTPPLVSNTSMSGNPEREIVAPKPIRVTPDLVTGVEDLSQPWTRSPRKFKMEPVIATWCFISSDSSLTGNTVLATTDPSSFRDTMRLAPMPDSYDLDRGLLLAVQAIQALLEKKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKRVKDFKYDNFSSLDLALLSKNIDDIRNVRRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRKSLDLWVAVVGGVHSHLISRVQRDKSRVGCFMSQNEIMMTVFPMFQLHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDILTILDPAKFCSSVQKFIDIYLKLPGIPSNGQLTEGDCIRVRICEGKFALLIREPIREGSFIIQPKVDFDIGISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVSGPYIQIKGVDKDAVAAAGSMLKLDGSYTTKSYLQIILENLPALERTFGGIHSQQSARMQEIVEFIQSQGSSLASECSPSRVASPIEGMIEEMQSRIRRLERWLTVNTVLWTFLMSALVGYSLYQRKRQ 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1643 955 CDD UMPK_like 78 226 - -
Lele50g1643 955 PANTHER URIDINE KINASE 11 274 - -
Lele50g1643 955 Gene3D - 63 242 IPR027417 -
Lele50g1643 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 176 IPR027417 -
Lele50g1643 955 Gene3D - 519 696 IPR027417 -
Lele50g1643 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 690 IPR027417 -
Lele50g1643 955 SMART AAA_5 61 211 IPR003593 -
Lele50g1643 955 SMART AAA_5 519 663 IPR003593 -
Lele50g1643 955 PRINTS Uridine kinase signature 547 558 - -
Lele50g1643 955 PRINTS Uridine kinase signature 520 537 - -
Lele50g1643 955 PRINTS Uridine kinase signature 641 651 - -
Lele50g1643 955 CDD UMPK_like 522 690 - -
Lele50g1643 955 Gene3D - 707 867 - -
Lele50g1643 955 SUPERFAMILY CYTH-like phosphatases 728 862 IPR033469 -
Lele50g1643 955 Pfam Phosphoribulokinase / Uridine kinase family 65 223 IPR006083 GO:0005524|GO:0016301
Lele50g1643 955 Pfam Phosphoribulokinase / Uridine kinase family 522 687 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1643 Lele-ChrLele50 21480178 21490555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1643 515 656 PRT Gene Family AT1G55810 25.325 1.40e-08 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1643 50 21480178 21490555 Lele50g1643 50 21480178 21490555 ECH
Lele50g1643 50 21480178 21490555 Lele51g1218 51 8017462 8020578 hybridization
Lele50g1643 50 21480178 21490555 Lele52g1598 52 19873155 19884982 hybridization