Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1636 ATGTTTTACATTCAACATAACTCATCAAAAATTAACAGAAACTTCATATCATCATCACGTTCCTATCAAGAAAGAAAAAAGGAAACCCTAAGCTTAAAGGAGCAAAAGACATTGAACAAAAGTAAAAGGAAAAGAAAAGGGAAGAGAAATAGGAAAAGAAAACAGAAAATGACTCGCAATAACGAGGATGAGGATATAGCAAATATGGAGGAAGGTCAAAGTAAAGGATCTGGTTTCTGTGGTTCTTCTTCCACAGTTCTAATCATACAGAAGATAATTGCAGAGGCAATAGGGACATACATGGTGGTATTTGCAGGGTGTTGTTCAGTGGTTTTGAATGTGTTAGATGGGAGAGTGACATTTCCTGGGGTGTGTGTAGTTTGGGGTTTAATAGTAATGATAATGGTTTATTCGGTGGGGCACATCTCCGGCGGTCACTTTAACCCGGCGGTGACGGTGGCGTTCACCCTTTTCCGGCAGTTTCCTTGGAGACAGGTACCAATGTATATGATAGCACAGTTGGGGGGATCATTACTGGCCAGTGGGACGTTGTACATGTTGTTCGAGGTAGACGACAAGTCTTATTTTGGGACATTGCCTTCAGGATCAAATGTTCAGTCACTTGTGATGGAGATTATCACTTCTTTCTTGTTGATGTTCGTTGTTTCTGCTGTTGCCACTGATACTAGAGCTATCGGAGAATTGGCAGGAATTGCAGTTGGCATGACGATTTGTGTAGATGTCTTCATTGCTGGGCCAGTGTCAGGAGCATCAATGAACCCAGCAAGAAGTATTGGGCCAGCAATAGTGATGAACACATACAAGTCAATATGGGTTTATATAGCAGGCCCATTTATTGGCACCATTTTTGGGGCCTTTGCCTACAGCCTTATTAGATTTACCGACAAACCTCTCCGAGATATCAAGAGAGTCCCGGGCTCCTTGTTCAAAAGCGTCTCGACACGCCCTTGA 972 0.4259 MFYIQHNSSKINRNFISSSRSYQERKKETLSLKEQKTLNKSKRKRKGKRNRKRKQKMTRNNEDEDIANMEEGQSKGSGFCGSSSTVLIIQKIIAEAIGTYMVVFAGCCSVVLNVLDGRVTFPGVCVVWGLIVMIMVYSVGHISGGHFNPAVTVAFTLFRQFPWRQVPMYMIAQLGGSLLASGTLYMLFEVDDKSYFGTLPSGSNVQSLVMEIITSFLLMFVVSAVATDTRAIGELAGIAVGMTICVDVFIAGPVSGASMNPARSIGPAIVMNTYKSIWVYIAGPFIGTIFGAFAYSLIRFTDKPLRDIKRVPGSLFKSVSTRP 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1636 323 MobiDBLite consensus disorder prediction 26 68 - -
Lele50g1636 323 Gene3D Glycerol uptake facilitator protein. 41 307 IPR023271 -
Lele50g1636 323 PRINTS Major intrinsic protein family signature 278 298 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g1636 323 PRINTS Major intrinsic protein family signature 210 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g1636 323 PRINTS Major intrinsic protein family signature 128 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g1636 323 PRINTS Major intrinsic protein family signature 165 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g1636 323 PRINTS Major intrinsic protein family signature 90 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g1636 323 PRINTS Major intrinsic protein family signature 241 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g1636 323 ProSitePatterns MIP family signature. 146 154 IPR022357 -
Lele50g1636 323 TIGRFAM MIP: MIP family channel proteins 94 295 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g1636 323 CDD MIP 90 298 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g1636 323 SUPERFAMILY Aquaporin-like 87 304 IPR023271 -
Lele50g1636 323 MobiDBLite consensus disorder prediction 38 55 - -
Lele50g1636 323 Pfam Major intrinsic protein 84 295 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g1636 323 PANTHER AQUAPORIN NIP2-1 54 304 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1636 Lele-ChrLele50 21417040 21419595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1636 55 322 Major Intrinsic Protein MIP AT5G37820 60.432 1.76e-117 340
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1636 50 21417040 21419595 Lele52g1590 52 19803590 19805969 hybridization