Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1625 ATGGCCGGCGGAGACGCCGGCGATGTGGACCGTACGCCGGAACTCCTAGGCCTGGTTCATGATATCGCTGCAATGTACGGTGGGGCAGCTTGTGGTTCTTCCTCCTCCTCCTCCGCCATTGCCGCCGATGCTGTGTTCAAGAAGGATTGCATCGATCTGGTTCGTCGGATCTCACTTCTTTCCCATTTGTTTGAGGAGATTAGGGATTTAAAGGCTGTTAATTCTACTGAGCTGGATGCTTCCACTTCTTCCAATGGCACTCCCTCTTCCTGGTCCTTTGATCTGGTGCTGGCTCTTCAATCTGCTAAGCGCCTTCTTTCCGTCGCTAGTAACTTTCATTCCAATTGCACTTCTGATGAAGCTGCAAAGACTATTGTCTTCCAATTTCAGTGCGTGACATGGAAATTGGAGAAACTTTTGAGTGAATTACCTTATGACCATTTGGACATATCAGAAGAAGTTAGAGAACAGGTGGAGTTGGTGAGAACACAATTGAGTCGAGCCACTGAAAGATATGGATTTATGATCTCAAACATGTCATCTAGTGACATATCCCAGCAACTGGCTGAAACCGTTTGTCAGGTTAATGGAAAATCTAGGAATCAGTTGCAAAAGCAAAACAGCTGCCCTGAGTATTTACTAACACTAGACAACATTCCTAAAAGCAACAGAGGGAAAAAATGCAGCACGTGTCAGGCAAGTCTTCACTTGGAAAGGGCAAGGAGCATCCCTGCCTCTTCGGAGGCTTCTTTATCAAATGTGATTTATCCTGAAAGTCAAGAAACTTCCGAGAAGAAGGGCCTAACAAGAGTTAAAACACCTGAAGCTATTGTAATTCCGGAAGATTTTCTTTGCCCTATATCATTGGAATTGATGAGGGATCCCGTTATTGTGGCCACAGGCCAGACATATGAGCGGTCTTACATACAGAGATGGATAGCAAGTGGAAATGTAACTTGTCCAAAAACTCGCCAGAAGTTGGAAAACTTGAACCTAACACCAAATTATGTTTTAAGGAGCCTTATCAATCAGTGGTGCACAGATAACAACTTTGAGCAGCCAAGAGGACTGACCCATGGCAAGCTAAAACAGAGTGATGGATCATTTAGAGATGTTACGGGTGACATGGCAACCATTGAGGCTCTGATCTTGAAGCTCTCAAGCAATTCCATTGAGGATTGTAGAGCAGCTGTCACTGAAATCCGATCGCTTTCAAAACGGAGCACAGACAACAGAATACTAATCGCTGAAGCTGGAGCGATTCCAGTTCTGGTCAACCTGTTAACATCAGAAGATGTATTGACACAAGAGAATGCAGTTACTTCAATTCTCAACCTCTCTATATATGAAAACAACAAGGGACTTATAATGCTTGCAGGTGCCATCCCATTAATTGTGCAAGTTCTTAGAGTTGGAAGCATGGAAGCAAGAGAAAATGCTGCGGCAACCCTTTTTAGCTTATCATTTCTTGATGAGAACAAAATAATAATTGGTTCCTCAGGAGCTCTCCCACCTTTGATAGAATTGCTCCAAAATGGCAGCCCTAGAGGGAAGAAAGACGCAGCATCAGCATTATTCTACTTATGCATTAATGAAGGGAACAGGGTTAGGGCCATTAGATCAGGGATCATCCCTGCATTGTTAAAGATGCTTACAGATTCAAGAAAATCAATGGTTGATGAAGCCTTAACAATAATGTCAGTTCTTGGCAGCCACCACGGGGCAAGGGTTTCCATTGTAAATGGCGGCACTATGCCTGTTTTGATTGATCTTTTGAGTACAGGTCTGCCTCGACACAAAGAGAATGCAGCCGCCATTTTGTTTTCCTTGTGTAAGAGAGATGCTAATAATCTTGCTTGTTTAAGTACTCTTGGTGGTGTCAAGCCATTGACTGAACTTGCTCTCAGTGGCACTGAGAGGGCTAAACGGAAGGCCACTTCATTATTGGAACATATTCGCAGGTCCCAGGAGCTTTGA 1977 0.4406 MAGGDAGDVDRTPELLGLVHDIAAMYGGAACGSSSSSSAIAADAVFKKDCIDLVRRISLLSHLFEEIRDLKAVNSTELDASTSSNGTPSSWSFDLVLALQSAKRLLSVASNFHSNCTSDEAAKTIVFQFQCVTWKLEKLLSELPYDHLDISEEVREQVELVRTQLSRATERYGFMISNMSSSDISQQLAETVCQVNGKSRNQLQKQNSCPEYLLTLDNIPKSNRGKKCSTCQASLHLERARSIPASSEASLSNVIYPESQETSEKKGLTRVKTPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIASGNVTCPKTRQKLENLNLTPNYVLRSLINQWCTDNNFEQPRGLTHGKLKQSDGSFRDVTGDMATIEALILKLSSNSIEDCRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPLIVQVLRVGSMEARENAAATLFSLSFLDENKIIIGSSGALPPLIELLQNGSPRGKKDAASALFYLCINEGNRVRAIRSGIIPALLKMLTDSRKSMVDEALTIMSVLGSHHGARVSIVNGGTMPVLIDLLSTGLPRHKENAAAILFSLCKRDANNLACLSTLGGVKPLTELALSGTERAKRKATSLLEHIRRSQEL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1625 658 Pfam Armadillo/beta-catenin-like repeat 491 529 IPR000225 GO:0005515
Lele50g1625 658 Pfam Armadillo/beta-catenin-like repeat 409 447 IPR000225 GO:0005515
Lele50g1625 658 Coils Coil 151 171 - -
Lele50g1625 658 SMART arm_5 572 612 IPR000225 GO:0005515
Lele50g1625 658 SMART arm_5 408 448 IPR000225 GO:0005515
Lele50g1625 658 SMART arm_5 531 571 IPR000225 GO:0005515
Lele50g1625 658 SMART arm_5 449 489 IPR000225 GO:0005515
Lele50g1625 658 SMART arm_5 490 530 IPR000225 GO:0005515
Lele50g1625 658 Gene3D - 357 573 IPR011989 -
Lele50g1625 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Lele50g1625 658 Gene3D - 574 657 IPR011989 -
Lele50g1625 658 SUPERFAMILY RING/U-box 278 353 - -
Lele50g1625 658 Pfam U-box domain 279 349 IPR003613 GO:0004842|GO:0016567
Lele50g1625 658 CDD RING-Ubox_PUB 283 325 IPR045210 -
Lele50g1625 658 FunFam RING-type E3 ubiquitin transferase 364 658 - -
Lele50g1625 658 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Lele50g1625 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515
Lele50g1625 658 SUPERFAMILY ARM repeat 378 653 IPR016024 -
Lele50g1625 658 PANTHER U BOX DOMAIN-CONTAINING 47 653 - -
Lele50g1625 658 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Lele50g1625 658 FunFam RING-type E3 ubiquitin transferase 276 352 - -
Lele50g1625 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 460 502 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1625 Lele-ChrLele50 21308513 21311596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1625 44 655 U-box Gene Family AT1G23030 57.303 0.0 657
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1625 50 21308513 21311596 Lele50g1625 50 21308513 21311596 ECH
Lele50g1625 50 21308513 21311596 Lele51g1233 51 8142405 8145407 hybridization
Lele50g1625 50 21308513 21311596 Lele52g1578 52 19658525 19661609 hybridization