Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1623 ATGATCAGCAACCTCGATAACTCACTTCAGGTTCAGGTTTCCGTCTATGGCGAGCATGGCTACCCTGTCACGGTGGCACGGTACTGTCCCAACGGTGAATGGATTGCTTCAGCGAATGTCTCCGGCACTGTTCGGATCTGGGTCACCCATAACGATTTTGTTCTTAAGAATGAGTTCCGGGCCCTGTCGGGTCGGAGAGATGACCTTCAGTGGTCCGCTGACGGCAGCACTGTTGGGGATTTTGATGGTCATTCACGGCGAGTTTTAAGTTGTGCATTCAAACCAACAAGGCCTAGTCGTATTGTTGCATGTGGGGAAGACTTTTTGGTGAATTTCTATGATGGTCCTCCATTCAAGTTCAATATGTCCATCAGATTTTCCCCTGATGGAACCAAATTCATTACTGTGAGTTCAGATAGAAAGGGCATCATATATGATGGGAAGAGTGGGGACAAACTTGGCGAGTTGTCTGCAGAGGCTGGCCACAAGGGCAGCATATATTCTGTAAGTTGGAGTCCTGACAGGGTTCCTTTGGAAGGGGCTAATTTCGGAGCTCCTGAGCAAATTGAGGTTGGCAGCCAGCCAAAAGACTTGAGCCTTGCCTTTGGTTCTCCTAAACTCGCTTTGGCAGCAATTGAATCTGGAGTTGTTTTGCTCAATGGTTCAGAAATTATCGCTACTCAAAACCTCGACTTCGCTGTGACTGCATCTGCAATTTCACCTGATGGAAGTGAAGCAATTGTAGGTGGGCAAGATGGTACGTTGCACGTATATTCTGTCTCAGGAAATACACTTACAGAAGAGAAAGTCCTTGAAAAGCACCGGGGTGCTATCAGTGTGATAAGATATTCTCCAGATGTTACCATGTTTGCTTCCGCTGACTTGAATCGTGAAGCTGTTGTTTGGCACCGTGACTCTATGTTATCAATCAATAACACACATTTTGAAATGGTGAGATTGACTGAGAGATCAGTCCGTTCCTTGAGCTGCCATTTCTGGAGAAGATGGCTGGATTCGTGTTTGGAAATTGGCTTCGGAATAAACTTCTCTTCAGAACAACTACTATTCGTTATGGCCATAGAAGAGTTGGATCAAATGCCTGAACTGGCTTCAACTCTGTAA 1122 0.4599 MISNLDNSLQVQVSVYGEHGYPVTVARYCPNGEWIASANVSGTVRIWVTHNDFVLKNEFRALSGRRDDLQWSADGSTVGDFDGHSRRVLSCAFKPTRPSRIVACGEDFLVNFYDGPPFKFNMSIRFSPDGTKFITVSSDRKGIIYDGKSGDKLGELSAEAGHKGSIYSVSWSPDRVPLEGANFGAPEQIEVGSQPKDLSLAFGSPKLALAAIESGVVLLNGSEIIATQNLDFAVTASAISPDGSEAIVGGQDGTLHVYSVSGNTLTEEKVLEKHRGAISVIRYSPDVTMFASADLNREAVVWHRDSMLSINNTHFEMVRLTERSVRSLSCHFWRRWLDSCLEIGFGINFSSEQLLFVMAIEELDQMPELASTL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1623 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 312 IPR001680 GO:0005515
Lele50g1623 373 Pfam WD domain, G-beta repeat 13 47 IPR001680 GO:0005515
Lele50g1623 373 SMART WD40_4 9 48 IPR001680 GO:0005515
Lele50g1623 373 SMART WD40_4 149 220 IPR001680 GO:0005515
Lele50g1623 373 SMART WD40_4 221 259 IPR001680 GO:0005515
Lele50g1623 373 SMART WD40_4 115 146 IPR001680 GO:0005515
Lele50g1623 373 SMART WD40_4 264 303 IPR001680 GO:0005515
Lele50g1623 373 SMART WD40_4 74 114 IPR001680 GO:0005515
Lele50g1623 373 SUPERFAMILY WD40 repeat-like 13 303 IPR036322 GO:0005515
Lele50g1623 373 Gene3D - 178 330 IPR015943 GO:0005515
Lele50g1623 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 47 IPR001680 GO:0005515
Lele50g1623 373 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 75 175 - -
Lele50g1623 373 Gene3D - 1 176 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1623 Lele-ChrLele50 21286310 21289873 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1623 50 21286310 21289873 Lele51g1238 51 8194346 8197926 hybridization
Lele50g1623 50 21286310 21289873 Lele52g1576 52 19645877 19649454 hybridization