Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1622 ATGAGGAAGCCTTGCTGTGATAAGCAAGACATGAACAAAGGAGCTTGGTCTAAACAAGAAGACCAGAAACTCATTGATTATATCAAGAAACATGGCGAGGGTTGCTGGCGTACTCTTCCTCAAGCCGCGGGGTTACTTCGCTGCGGCAAGAGTTGCAGGCTGAGGTGGATAAATTATCTAAGGCCAGACCTTAAAAGAGGCAACTTTGCTGAAGATGAAGAAGATCTCATCATTAAGCTTCATGCACTGCTTGGCAACCGTTGGTCTCTGATAGCTGGAAGATTACCTGGAAGAACAGACAATGAAGTAAAGAATTATTGGAACTCTCATCTAAGAAGGAAGCTCATCAACATGGGAATCGATCCAAATAATCACAGACTGAGTCACAAATTCCCTTCTCTTCATCAAAATCATCAAGCAACATCTGGTAGCTCAGCATCATCAGGCTCGAAACAAAAAGAGGCCAAAAACAACAACGACAATATTGAGCCAACAAAAAATAAGCCTAAAACTGGTGATGACAATATTAAGCATGAACAAGTAGTTTCAGATGCTGCAAGTGGCTTGGAAGATGAATCCTCTGCCTTATTACCAGATCTAAACCTTGATCTCACCATCAACATTCCTTCAAGTGCTGCTTATGAACACAGTCATCAAAAGCCAATTCTTCCTCATGAATCTTCTAAGTCTCCAATGACTATGCAATTAGCTTCCTCTCCAACCCTACTTCTGTTTCAGTGA 741 0.417 MRKPCCDKQDMNKGAWSKQEDQKLIDYIKKHGEGCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLINMGIDPNNHRLSHKFPSLHQNHQATSGSSASSGSKQKEAKNNNDNIEPTKNKPKTGDDNIKHEQVVSDAASGLEDESSALLPDLNLDLTINIPSSAAYEHSHQKPILPHESSKSPMTMQLASSPTLLLFQ 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1622 246 CDD SANT 15 60 IPR001005 -
Lele50g1622 246 FunFam Transcription repressor MYB4 68 134 - -
Lele50g1622 246 FunFam MYB-related transcription factor 12 65 - -
Lele50g1622 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Lele50g1622 246 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lele50g1622 246 MobiDBLite consensus disorder prediction 129 155 - -
Lele50g1622 246 CDD SANT 68 111 IPR001005 -
Lele50g1622 246 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lele50g1622 246 SMART sant 12 62 IPR001005 -
Lele50g1622 246 SMART sant 65 113 IPR001005 -
Lele50g1622 246 MobiDBLite consensus disorder prediction 156 177 - -
Lele50g1622 246 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Lele50g1622 246 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lele50g1622 246 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Lele50g1622 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Lele50g1622 246 MobiDBLite consensus disorder prediction 224 246 - -
Lele50g1622 246 MobiDBLite consensus disorder prediction 126 177 - -
Lele50g1622 246 Gene3D - 68 115 - -
Lele50g1622 246 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 180 - -
Lele50g1622 246 MobiDBLite consensus disorder prediction 213 246 - -
Lele50g1622 246 Gene3D - 13 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1622 Lele-ChrLele50 21279700 21281447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1622 2 224 MYB Transcription Factor Family AT4G38620 54.348 1.81e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele50g1622 Myb_DNA-binding 1.1e-14 CL0123