Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1610 ATGCTTAATTGCAGTATCAGTCCAATCATAATGCCATTCAGAGATTTTGTTCGTGAGCTGAGGGAAATTCGAGATGGCCTGGGTAATATATCTAGAAGAGGGATAGAGGCCAAGCGTAATTATTGCCGTGGAAAATCTCTTATTGCACCTGAATTGTCGTCACCGGCATCGTCATCTTTGTTAGTGGCTGAGCAGAGCCGCTGGGCTAACTTACCACCTGAGTTGTTATTAGAAATAATTCAAAGGGTGGAAGCAAGTGAAACTTCCTGGCCTGCCCGGAGGGCGGTTGTAGCCTGTGCTTCAGTTTGTAGGTCATGGAGAAAAATAACAGAGGAGGTGGTAAAGACACCAGAACAGTGTGGGGGGCTTACTTTTCCCATATCGCTGAAGCAGCCTGGTCCAAGAGAGACTCCGATACAGTGTTTTATAAAGAGAGAAAGGGCGACTTCAAAATATCATTTATATCTTGGTTTGAGCCCAGCTCTCTCTGGGGATATGAGCAAACTGTTACTGGCAGCGAAGAAGATCAGACGGACGACATGTACAGAATTCTTGATATCCTTGGTCGCAGATGATTTTTCTAAATCAAACAATACTTATGTCGGAAAGCTGAGGTCTAATTTTCTAGGCACCAAGTTCATGATCTCGGATAGTCAGCTTCCGCTTGACTCTTCCCTTCCATTGAATGGTAAATTGCAGCAAAGAATCCATTCAAAGCAGGTTCTTCCAAGGGCTGCTGCTGCAAAGAATAATGTGGCCACCATATCTTATGAGCTCAATGTTCTCCGCACAAGAGGTCCAAGGAGAATGCGATGTACGATGCATTCAATTCCATTATCTTCCATCCAAGAAGGGGGCACTGCCCCTACTCCTTTGAAGTTTGCTAATGGCCTCGATGAACATTTATCTACTGCACACATATCAAAAGGGGAAAAGTCAGGAGTTGAGTATGACTCCAATAGTGATGACAAGCCACCGGAATCGAACCACATTGCAAGGGAGCCGCTGATTTTGAAAAATAAAGCTCCTAGATGGCATGAACAACTGCAGTGTTGGTGCTTGAATTTCAAGGGACGTGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTTGTAGCCGCTGCAGAACCTCCACAAAATGTTTCAGCGGCAGAACAAGATAGAGTAATACTACAATTTGGGAAGATTGGAAAGGACATTTTCACCATGGATTACCGATATCCCCTCTCTGCGTTTCAAGCCTTTGCAATCTGCTTGAGCAGCTTTGACACGAAACATGCTTGCGAGTGA 1287 0.4483 MLNCSISPIIMPFRDFVRELREIRDGLGNISRRGIEAKRNYCRGKSLIAPELSSPASSSLLVAEQSRWANLPPELLLEIIQRVEASETSWPARRAVVACASVCRSWRKITEEVVKTPEQCGGLTFPISLKQPGPRETPIQCFIKRERATSKYHLYLGLSPALSGDMSKLLLAAKKIRRTTCTEFLISLVADDFSKSNNTYVGKLRSNFLGTKFMISDSQLPLDSSLPLNGKLQQRIHSKQVLPRAAAAKNNVATISYELNVLRTRGPRRMRCTMHSIPLSSIQEGGTAPTPLKFANGLDEHLSTAHISKGEKSGVEYDSNSDDKPPESNHIAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPPQNVSAAEQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKHACE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1610 428 Pfam F-box domain 68 113 IPR001810 GO:0005515
Lele50g1610 428 SUPERFAMILY Tubby C-terminal domain-like 117 428 IPR025659 -
Lele50g1610 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Lele50g1610 428 Gene3D - 63 114 - -
Lele50g1610 428 PANTHER TUBBY-RELATED 61 426 - -
Lele50g1610 428 Gene3D Tubby Protein; Chain A 126 428 IPR025659 -
Lele50g1610 428 ProSitePatterns Tub family signature 1. 356 369 IPR018066 -
Lele50g1610 428 MobiDBLite consensus disorder prediction 309 333 - -
Lele50g1610 428 PRINTS Tubby superfamily signature 200 224 IPR000007 -
Lele50g1610 428 PRINTS Tubby superfamily signature 249 276 IPR000007 -
Lele50g1610 428 PRINTS Tubby superfamily signature 356 372 IPR000007 -
Lele50g1610 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Lele50g1610 428 PRINTS Tubby superfamily signature 184 200 IPR000007 -
Lele50g1610 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Lele50g1610 428 PRINTS Tubby superfamily signature 338 355 IPR000007 -
Lele50g1610 428 Pfam Tub family 129 423 IPR000007 -
Lele50g1610 428 SUPERFAMILY F-box domain 65 111 IPR036047 GO:0005515
Lele50g1610 428 MobiDBLite consensus disorder prediction 309 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1610 Lele-ChrLele50 21149739 21152553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1610 11 428 TUB Transcription Factor Family AT2G18280 58.134 1.05e-165 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele50g1610 Tub 1.6e-104 CL0395