Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1572 ATGGGATTGCAGAACCAGCTAAACGATGTCGCTTCAGATTCGATTCCTCTACTTTTCTTGGCTCTCGTCGCCGACTCCCTCAACCAGCTCCGTTCCTTCCTTATCGCCCTCCTCCAATCGCTCGGACTCTCCAGATTCGACCCAAACCCTGTCGTTGTTGATGATGGATTTTTCACCGCCGTTGGATCGGGCCTTGCCAGCTTAATCGTCCTCTCCGAGCAGCTCAATCTTAATCGCCGTGTGTCCTACATATACTCCATCGTAGGTGGCGGCGATGATGGTCCTGCCGGCGTGATTGGGTCTCCCAAGTGTGTTGTGTGCCAGAGCACGTTCGAAGATGGGGACCAAGTTCGACGGCTTCCCTGCCGCCATGTTTTTCACCGATGCTGCTTCGATGGCTGGCTGGACCGCCTCAATTTCAACTGTCCTCTCTGTCGGACACCGCTGGTGTCCGACGAACGCGTGGTCCTTGCTGAGCGGCGCGTCGCTCCGGAGCTTGTATCCTGGTTCTCTTTTCGATGA 522 0.5575 MGLQNQLNDVASDSIPLLFLALVADSLNQLRSFLIALLQSLGLSRFDPNPVVVDDGFFTAVGSGLASLIVLSEQLNLNRRVSYIYSIVGGGDDGPAGVIGSPKCVVCQSTFEDGDQVRRLPCRHVFHRCCFDGWLDRLNFNCPLCRTPLVSDERVVLAERRVAPELVSWFSFR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1572 173 Pfam Ring finger domain 103 146 IPR001841 -
Lele50g1572 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 155 IPR013083 -
Lele50g1572 173 PANTHER RING ZINC FINGER PROTEIN-RELATED 72 154 - -
Lele50g1572 173 SUPERFAMILY RING/U-box 103 152 - -
Lele50g1572 173 SMART ring_2 104 145 IPR001841 -
Lele50g1572 173 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1572 Lele-ChrLele50 20886708 20887229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1572 1 173 C3H Transcription Factor Family AT1G15100 47.977 5.66e-45 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1572 50 20886708 20887229 Lele51g1271 51 8453267 8453788 hybridization
Lele50g1572 50 20886708 20887229 Lele52g1525 52 19257277 19257798 hybridization