Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1562 ATGCACAATAAGGACGCTTGCTCTTCTTCAAATGGAGGAGTCGGCACCAACATCGCTACTTCTCAAATGCAATCCAATGGCTCCATTTATGGGGCCATCTACTCGACTCTGTTTTCTGACAAGCCATCCATGCCTGTTTCCGACAATATCGACCTCTCGCTTCACTCGTATGAAGGAAACTCTCCCTTCAAGTACAATGACTCGCGGATTCAGAGTCACCTGTACGATTCCTGTGCCATACAGAATCATCAAGATATGGTGAACCGCCATAGCATGTGCCTAAATCGCCTCGCCGAAACTTCAAAGGAGGTTGAGGCTCTGAGGCAGGAGAACAACCAACTTCGGACTGTGAACAGGGAACTGAACAACCAATTGAGCCTCCTCATTCAGGTTTCGGTCCAGAATCAATTGGATGGCTCCTCTGGTCATGCAGAAGCGTTTGACGTCATAAATGGGTTTCGTGACTTACGTGTTGAGGACAATTTCGGGGATGGGAAAGAGAACTGTGAAAATTGGAATAAGGACCAAGAGGTTTTGAATGAGAGCCCAACAAACGTGATTGAGAACACTGTCGAAGTGGAAAGGTTCTCGTTGCCCAAGAGTATATCTGTGAGGTCAAATGGGTACTTGAAGGTTGCTCAGTCGGCGGCCGCTGGTGCCGGCAATGGAAATCGCAACAAGGGCGCCGCCCGGCCACGCACAGCTTTGACTCCAACTGATGTCGTGCAAAAGGTGTATGTGCGTGGAGGGAAGAAGGAGGAGGAGCCTCTGGAGATGGTGGTGTATAACCAAGGCATGCTCAAGACGGAGCTGTGCAACAAATGGCAGGAGACGGGGACATGCCCCTATAAGGATCAGTGCCAATTCGCTCACGGAATTGGTGAACTCCGCCCAGTCATCCGCCATCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGCGTGGTATGCCCATATGGGCATAGATGCCATTTCCGCCATGCACTCACTGAACAGGAGAAAGCCATAGCACAGCCTAAGCCCAGGGCAATGAACCTGCACAGATGA 1053 0.5071 MHNKDACSSSNGGVGTNIATSQMQSNGSIYGAIYSTLFSDKPSMPVSDNIDLSLHSYEGNSPFKYNDSRIQSHLYDSCAIQNHQDMVNRHSMCLNRLAETSKEVEALRQENNQLRTVNRELNNQLSLLIQVSVQNQLDGSSGHAEAFDVINGFRDLRVEDNFGDGKENCENWNKDQEVLNESPTNVIENTVEVERFSLPKSISVRSNGYLKVAQSAAAGAGNGNRNKGAARPRTALTPTDVVQKVYVRGGKKEEEPLEMVVYNQGMLKTELCNKWQETGTCPYKDQCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAIAQPKPRAMNLHR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1562 350 PANTHER CCCH ZINC FINGER/TIS11-RELATED 82 338 IPR045877 GO:0003729
Lele50g1562 350 SMART c3hfinal6 266 293 IPR000571 GO:0046872
Lele50g1562 350 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Lele50g1562 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 292 IPR000571 GO:0046872
Lele50g1562 350 FunFam zinc finger CCCH domain-containing protein 15-like 260 299 - -
Lele50g1562 350 SUPERFAMILY CCCH zinc finger 300 334 IPR036855 GO:0046872
Lele50g1562 350 ProSiteProfiles Zinc finger C3H1-type profile. 266 294 IPR000571 GO:0046872
Lele50g1562 350 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Lele50g1562 350 SUPERFAMILY CCCH zinc finger 263 298 IPR036855 GO:0046872
Lele50g1562 350 Coils Coil 97 127 - -
Lele50g1562 350 FunFam Zinc finger protein 36, C3H1 type-like 1 300 336 - -
Lele50g1562 350 Gene3D - 261 299 - -
Lele50g1562 350 Gene3D - 300 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1562 Lele-ChrLele50 20809351 20811169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1562 74 339 C3H Transcription Factor Family AT1G68200 53.676 5.05e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele50g1562 zf-CCCH 8.2e-10 CL0537