Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1553 ATGTCATTTTCCATGAAGTTCGGTGGAAACCAAGGTTTGGAGAAACAATTTGTTGTTATACTTGTAATCAAGTGGGATGAAGTTGATCTGAAGCCAGTTTCAGTTTTGAGTTTTTGGGCCAATCACTGCATTGGTGGCCAAGTTATGGCATCTGGTGAAGGGAGGCGTCACCATCATAATCTTGTGCCTCTTGTGGCATTGATAAGAAGGGATATTAATAGCGAGAAGATGGAGAAGCCCACTGTGAGGTATGGACATGCTGCTCAGTCTAAGAAAGGGGAGGATTACTTTTTAATAAAGACCGATTGTCAGCGAATACCTGGAAATTCTTCGTCAGCATTTTCTGTATATGCGGTATTTTCTCCACTTTTATCTTATATTGTTTTTCAACTGCCAATTAGAGGATTACTGGTTTCCGGTTCCGGTTTGAATGAGTGGAAAATTTGTATCTTTGATGGTCACAATGGAAATGCAGCAGCAATTTTTAGTAGGGAAAATTTGTTAAATCACATTTTGGGTGCTCTTCCTCGAGGTATTGGAAGAGAGGAGTGGCTTCGTGCATTACCTAGGGCATTGGTTGCTGGGTTTGTCAAGACTGACAAGGAGTTCCAGAGCAGAGGAGAAACTTCTGGCACCACAGCCACGGTTGTGATAGTCGATAGATGGACCGTGACGGTTGCATCAGTGGGAGATTCCCGTTGTATACTAGACACCCAAGGTGGCCCTATTACCAACTTAACTGTTGATCACAGACTTGAAGAGAATATTGAAGAGCGAGAACGTGTTACTGCAAGTGGAGGTGAAGTTGGAAGGCTTAGTATTTATGGTGGTGCTGAGCTGTCAAAAGCTGGTGGGAGGCTTATAATTGCTTCTGACGGCATCTGGGATGCTCTATCCTCAGAAATGGCAGCGAAATCTTGTCGGGGTTTGCCTTCTGAACTTGCTGCTAGGCAAGTTGTGAAGGAAGCATTAAGGACGAGAGGTTTAAAGGATGATACAACTAGCATAGTAGTTGACATAATTCCTCCTGATAATGGATTGCCACTGCCTCCGCCCCTAAAAAAGAAGAGTAAATTGAGATCTTTACTATTCAGGAAGAAATCCAGTGATTCCACTAGTAAGCTGTCGAAGAGGCTTTCGGCTGTTAATATAGTAGAGGAACTGTTTGAAGAAGGATCAGCAATGCTCGCTGAAAGATTAGGGAATGAAGGGAATTCAGGGGAACCTTCAACCTCAGGGATACTTGTATGCGCAGTGTGCCAGATAGATATTGCTTCAAGTGAAGGCATATCTGTTCATGCAGGCTCCATTTTCTCGACCAGCTCTAAGCCATGGCAAGGCCCTTTTCTTTGTGCTGATTGTCGCAACAAGAAGGACGCTATGGAAGGCAAGCGCCCTAGTGGAATTAGAGTCTCATAG 1419 0.439 MSFSMKFGGNQGLEKQFVVILVIKWDEVDLKPVSVLSFWANHCIGGQVMASGEGRRHHHNLVPLVALIRRDINSEKMEKPTVRYGHAAQSKKGEDYFLIKTDCQRIPGNSSSAFSVYAVFSPLLSYIVFQLPIRGLLVSGSGLNEWKICIFDGHNGNAAAIFSRENLLNHILGALPRGIGREEWLRALPRALVAGFVKTDKEFQSRGETSGTTATVVIVDRWTVTVASVGDSRCILDTQGGPITNLTVDHRLEENIEERERVTASGGEVGRLSIYGGAELSKAGGRLIIASDGIWDALSSEMAAKSCRGLPSELAARQVVKEALRTRGLKDDTTSIVVDIIPPDNGLPLPPPLKKKSKLRSLLFRKKSSDSTSKLSKRLSAVNIVEELFEEGSAMLAERLGNEGNSGEPSTSGILVCAVCQIDIASSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGIRVS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1553 472 CDD PP2Cc 149 340 IPR001932 -
Lele50g1553 472 Gene3D - 137 344 IPR036457 -
Lele50g1553 472 SUPERFAMILY PP2C-like 90 340 IPR036457 -
Lele50g1553 472 SMART PP2C_SIG_2 128 340 IPR001932 -
Lele50g1553 472 Pfam Protein phosphatase 2C 148 271 IPR001932 -
Lele50g1553 472 SMART PP2C_4 75 338 IPR001932 -
Lele50g1553 472 PANTHER PROTEIN PHOSPHATASE 89 272 - -
Lele50g1553 472 ProSiteProfiles PPM-type phosphatase domain profile. 76 340 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1553 Lele-ChrLele50 20728085 20731430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1553 49 471 PP2C-type Phosphatase Gene Family AT1G68410 64.240 0.0 560
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1553 50 20728085 20731430 Lele50g1553 50 20728085 20731430 ECH
Lele50g1553 50 20728085 20731430 Lele52g1509 52 19101463 19105386 hybridization