Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1548 ATGGCGGCAACGCTTTACTTGGCTACTGCCTTCTTCTCTACACTTTTTCATCTTCTTCTTCTTGTTCAGAGCTCCAAAAACCCTGACTTAGAAGCACTCATGGCGTTTAGAACTGCTTCAGATACGTTCCACAAGCTCTCAACTTGGAACTCCAGCACTGACCCTTGTTCTTCTTGGTCCGGCGTCTTTTGCCTCCATAACAGAGTCTCGCGTCTTATTCTCGAAGACCTCGACCTCCGAGGCTCTTTCGAACCTTTGACTTCTCTAACCCAGCTTCGAGTCCTGAGCCTTAAGCGGAACCGCTTCTCCGGCCCCATTCCAAGTCTCTCCAATTTCACGGCCTTGAAACTTTTGTATCTCTCTTACAATGAATTTTCCGGCGGCTTCCCGGCGACTGTTACGTTGCTTTTCCGCTTGTACCGTCTTGATCTGTCTCACAATAATTTGTCCGGCGAAATTCCCCTGACGATCAACCATTTGACCCACATTCTCACTCTCCGTCTAGATGAGAACCGTTTCTCCGGCAACATTCCCAGTCTTGACCTTGCTAACCTTCAAGACTTAAATGTCTCCGGGAACCGTCTCTCCGGCGAAATTCCCAAATCACTTTCGGGTTTCCCGGAATCAAGTTTCGCTCTAAACCCGTCTCTCTGCGGAGCTCCGATGCAGAAATGTGCCAACTTTGTGGCCGAACCCAGCAAACCCGGATCTGAAGGAGCTATTGCGTCGCCATTAACGCCGCGAAGCAACCCACGAGCGCCAACTATATCATCCACACCAAGCTCAATGCCTGGAAATGAAGCAACCCCTCCCAGAAAATCCAAGTCATCAGCAAAAATAAGCCCCACAGCTCTAATTGCCATTATTCTCGGCGACATTGTGGTTCTCGTTGTAGTCTCCCTTCTTCTCTACTGCTACTTCTGGCGAAACTATGCAGCGAAATTGAAAGAAGGAAAGGGTTCGAAGCTAATGGAGAGCGAGAAAATCGTGTATTCATCGAGCCCGTATCTGGGTCAATCGGGTTTTGAGAGGGGTCGAATGGTTTTCTTCGAAGGGGTGAAGAAGTTCGAGCTAGAGGATTTGCTTAAAGCTTCAGCGGAAATGCTCGGAAAAGGTGGGTTCGGGACGGCATACAAGGCGGTTCTGGATGACGGTAGCGTCGTCGCCGTCAAGAGGCTGAAAGACGCTCAGATTGGAGGGAAGAAAGAGTTCGAACAACAAATGGAAATTCTGGGAAGACTGAGAAACCCAAACATTGTTCATTTGAGAGCTTACTATTTCGCGAGAGACGAGAAGTTGCTCGTCTCTGATTACATGCCCAATGGCAGCTTGTTCTGGCTTCTTCATGGTAACAGAGGACCTGGCCGGACCCCACTGGATTGGACCACAAGGCTTAAAATAGCAGCCGGTGCGGCGCGTGGAGTTGCTTTTATTCACAGCTCATGCAAGTCGCTTAAGCTCACCCATGGTAACATCAAATCCACAAACATCCTCATCGACAGAGCGGGAAATCCGCGCGTGGCAGATTTCGGGCTCTCCATCTTTGCTGGCCCAAGCGCCACCGCCGCTCCGAAATCTAACGGCTACCGTGCCCCGGAGGCCGTTGACTGTCGGAGATGCACTCAGAAATCCGACGTGTATTCCTTTGGCGTTGTCCTGCTGGAGATTCTCACCGGGAAGTGCCCCTCGTCCGTGGACGGCGGCGGGTATGGTGGTAGCGCGGTGGTGGATCTTCCGAGGTGGGTACAGTCGGTGGTGAGGGAGGAATGGACGGCGGAAGTGTTCGATCTTGAGCTGATGAGGTACAAAGATAATGGGGATGAGATGGTGGGGCTGCTTCAGATTGCTTTGGCTTGTACCGCCGCCGCTCCTGATCAACGGCCCATCATGAGCCACGTGGTCAAGATGATCGAGGAGATTCGGGGGGTCGAGGTGGGGCAGGGAAATGACACGTCGGACTCTGTGTCTGATTCACCCTCCGTGTCTGAAGATGCTTCTTGA 2001 0.5167 MAATLYLATAFFSTLFHLLLLVQSSKNPDLEALMAFRTASDTFHKLSTWNSSTDPCSSWSGVFCLHNRVSRLILEDLDLRGSFEPLTSLTQLRVLSLKRNRFSGPIPSLSNFTALKLLYLSYNEFSGGFPATVTLLFRLYRLDLSHNNLSGEIPLTINHLTHILTLRLDENRFSGNIPSLDLANLQDLNVSGNRLSGEIPKSLSGFPESSFALNPSLCGAPMQKCANFVAEPSKPGSEGAIASPLTPRSNPRAPTISSTPSSMPGNEATPPRKSKSSAKISPTALIAIILGDIVVLVVVSLLLYCYFWRNYAAKLKEGKGSKLMESEKIVYSSSPYLGQSGFERGRMVFFEGVKKFELEDLLKASAEMLGKGGFGTAYKAVLDDGSVVAVKRLKDAQIGGKKEFEQQMEILGRLRNPNIVHLRAYYFARDEKLLVSDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHSSCKSLKLTHGNIKSTNILIDRAGNPRVADFGLSIFAGPSATAAPKSNGYRAPEAVDCRRCTQKSDVYSFGVVLLEILTGKCPSSVDGGGYGGSAVVDLPRWVQSVVREEWTAEVFDLELMRYKDNGDEMVGLLQIALACTAAAPDQRPIMSHVVKMIEEIRGVEVGQGNDTSDSVSDSPSVSEDAS 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1548 666 Pfam Leucine Rich Repeat 184 206 IPR001611 GO:0005515
Lele50g1548 666 ProSiteProfiles Protein kinase domain profile. 363 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g1548 666 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Lele50g1548 666 FunFam Nuclear pore complex protein NUP107 26 179 - -
Lele50g1548 666 SUPERFAMILY L domain-like 47 207 - -
Lele50g1548 666 MobiDBLite consensus disorder prediction 647 666 - -
Lele50g1548 666 Gene3D Phosphorylase Kinase; domain 1 340 438 - -
Lele50g1548 666 Pfam Protein kinase domain 367 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g1548 666 MobiDBLite consensus disorder prediction 248 276 - -
Lele50g1548 666 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Lele50g1548 666 CDD STKc_IRAK 369 640 - -
Lele50g1548 666 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 644 - -
Lele50g1548 666 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 439 649 - -
Lele50g1548 666 MobiDBLite consensus disorder prediction 645 666 - -
Lele50g1548 666 FunFam pollen receptor-like kinase 1 336 438 - -
Lele50g1548 666 Gene3D Ribonuclease Inhibitor 88 230 IPR032675 -
Lele50g1548 666 Gene3D Transferase(Phosphotransferase) domain 1 439 658 - -
Lele50g1548 666 Gene3D Ribonuclease Inhibitor 21 87 IPR032675 -
Lele50g1548 666 SUPERFAMILY Protein kinase-like (PK-like) 367 638 IPR011009 -
Lele50g1548 666 MobiDBLite consensus disorder prediction 236 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1548 Lele-ChrLele50 20696915 20700275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1548 29 665 Receptor kinase-like Gene Family AT1G68400 65.385 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lele50g1548 Pkinase 9.6e-37 CL0016