Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1546 ATGGTGATGCCAGACGGAGTTCTAGCTATAATGAATGGCACTGTGGACGCGGTTGATTCCTCATCCTCACTTTCCAAGACTTGCCGAAAGAACTCGCCGATTCTCATATTCTCTTTCTTCCATAAAGCTATTCGCTCTGAGCTCGATAGCCTCCATCGAGCCGCCTTGGATTTTGCCACTAACCAACATGCTGCTGCCTCTGACATCAAGCCCTTGTTCGACCGTTGTAACTTTCTTCGTACCATCTATAAGCATCACTGTAATGCGGAGGATGAGGTCATATTTCCTGCATTAGATATACGCGTGAAGAATGTTGCGCGAACATATTCCTTGGAGCATGAGGGAGAGGGTCTTCTTTTTGATCAATTGTTCAAGCTGCTGAATTCTAGTTTGATAGAGGAAGAGGTCTACCGTAGAGAATTAGCTTCTTGTACTGGTGCACTTCGAACATCAATTAGCCAGCATATGTTTAAGGAAGAGGAGCAGGTCTTCCCCTTGGTTATTGAGAACTTTTCATTGAAAGAGCAGGCGTCACTGGTGTGGCAATTTCTTTGCAGCTTACCAGTTAAAATGATGGCAGAATTTCTTCCCTGGCTTGCCTCATATGTATCGTCCGATGAGCATCAGGATATGCTTAAGTGCTTGTGCTCAATAATTCCTAAAGAGAAGCTTCTTCAACAGGTTGTTTTTGGATGGATGGAAGGGGTGAAGATTAAATGTAGAAGCTGCATAAATGATACCAAGGCTCATTGTGAGAATGTTGGGACACATGACTTAACCAATTGTTCTGAAAAGGTGTATTGTGCTTCTGAACCTTCCAAAACTGGAAAAAGGAAATGGATGGAGCTAAGCATTGATCATACCAGTTCTTATTCATCATGCCCTATAGATGAAATATTATTTTGGCACAAGGCCATAAAACAAGAGTTGATTGATTTAACTGAGGCTGTTAGGAAGATACAAGTTTCTGGAAAATTTTCTGATTTGTCTGCATTTAATGGGAGGTTGCAGTTCATAACTGAAGTCTGCATCTTTCATAGCATTGCTGAGGACAAAGTTATATTCCCTGCTATAGATGCAGATATTTCTTTTCTTGATGAGCATGCCGATGGGGAACTTCAGTTTGACAAGCTTAGATCCCTGATGGAAGGAATTCAGAATGCTGAAGTCAACTCATCATCTACTGAGGATTACATGAAGTTGATGTCTCACACTGAACAAATAAAGGACACCATGCTAAATCACTTTGACAATGAGGAAGCTCAGGTTCTACCGATTGCACGAAAACATTTTAGCCCCCAAAGACAACGTGAATTACTTTATGAAAGTTTGCGCTTAATGCCTTTGAAATTGATCGAATCTGTAATACCGTGGCTGGTTGGATTTCTAAGTGAAGAAGAAGCGAAGTTATTTCTACTGAATATGTATATGGCAGCCCCAACAACAGATTATGCATTAATTACACTGTTCTCTGGTTGGGCATGCAAAAGAAAATCTGGGAACAATGGTTCCTTTTCAAGTAAAACAGGTTTGTGTTCTGCAAGGAAACTATCGGAGATAGAAAACACTAGTCCATCATTCTGCATATGTGTTCCTTCATTCAGTCCCGAGAAAAAATACGCATCCATTCAACAAGATGATGCAAATGGAAGTAGGGGACCAGTCAAACATGGAAAGTTAGAACTGAGGGATGGGAATGATGTTTCTTGCCTCACTGGAACTAGAGAATCTTTTACCTTACCTGATAATCAGACTTGCTGTGTCCCTGGATTAGGGGTAAATGCAAGTCATCTGGGAGCGAATTCATTAGTCCCTGCCAAATCTCTGCGATCCTTATCTAACGGTTCCGTGCCTTCCCTTAACTCTACTCTATTTGCCTGGGAAACAGATGTAGTCTCTGCTGACAATGGGTTCAAAATCCGACCTATTGATAACATATTTAAATTTCATAAAGCTATTTGTAAAGACTTGGAGTATATAGATGTTGAATCTGGAAAATTGTTTGATTGTGATGAAAATTTCCTGAGGAAGTTCACTGGTAGATTTCGCTTATTGTGGGGTTTGTACAGAGCTCATAGCAATGCAGAGGATGATATAGTATTTCCAGAATTAGAATCAAAAGAAACTCTTCACAATGTGAGCCACTCCTACACTTTGGACCATAAGCAAGAAGAGAAATTATTTGTGGATATTTCATTTGGACTCTCAGAGCTTACTCAATTACATGAATCCTTGAATAATAAGAATTCATCAGAACATGTTACCAGCTTGTACTCTGATTATTCTGTTCGCTCTGATACCATGCAAAAGTATAATGAGCTAGTTACAAAGATTCAGGGCATGTGCAAATCTATTAGAGTAACGCTAGATCAACATATCTTCCGTGAGGAACTTGAATTATGGCCACTATTTGACGTTCATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTCGTATAATTGGTACTACTGGGGCAGAGGTTCTTCAATCAATGCTGCCATGGGTAACTTCTGCTCTCACACAAGAGGAGCAAAACACAATGATGGACACATGGAAGCAGGCTACCAAGAACACCATGTTCAATGAGTGGCTTAATGAATGGTGGGAAGGGCCCGCTTCAACTTCAAACACGACTACACCTAGTGACCATGTTTCACTAGGTGCTGATGCCTTTGGCAACTTGGATCATAGCCTTCAAGCTTTCAGGCCTGGGTGGAAAGATATATTCAGGATGAACCAGAATGAACTAGAATCAGAAATTAGAAAAGTTTCTCGTGATTCAACTCTTGATCCAAGGAGGAAATCCTATCTTATTCAAAATCTAATGACTAGTCGCTGGATAGCTTCTCAGCAGAAGTCATCTAAAGCAACAACGGATGAATTTGGAAATGGAGATGTACTTGAAAGATCACCATCGTTTCATGATCCAGAGACAAATATCTTTGGTTGTGAGCATTACAGAAGAAATTGTAAACTTCTTGCTTCTTGCTGTGGAAAGCTATTCTCCTGCAGGTTTTGCCATGACAAAGTCAGTGACCATTCCATGGATAGGAAGGCTACAACTGAGATGATGTGCATGCGCTGCCTGCAATTACAGCCAATTGGACCAGTTTGTGCAACGCCTTCTTGTGGTGGTCTGTCAATGGCAAAGTACTACTGTAGTATTTGCAAGTTTTTTGATGATGAAAGGGAAGTTTACCATTGCCCTTTCTGCAATATATGCCGTCTGGGGAAAGGACTTGGTGTTGATTCCTTCCATTGCATGCAGTGTAATTGTTGCTTGTCAATGAAATTAGTGGACCACCAGTGCCAGGAAAAAAGCTTAGAAACAAACTGCCCCATCTGCTGTGATTTTTTGTTCACATCTAGTACATCTGTCAGAGCTCTTCCTTGTTGCCATTTCATGCATTCCACTTGCTTTCAGGCATATACTTGTAGTCACTACACCTGTCCAATTTGTCGCAAATCTTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGATGCTCTGTTGGCTTCTGAGGAACTCCCTGAAGAGTATCAGAATCGCCGTCAGGATATACTATGTAATGATTGTGAAAAGAAGGGGACGGCCCCATTCCATTGGCTTTACCACAAGTGTGGGTTATGTGGGTCTTATAATACAAGGTTAACAGATGCCAAGTGCCATTCATTTCATCCTCTGGTGGAACTGATAGCATATTTGGTATCGTATCTTTCTCCTTCATCGCCTAATTGA 3741 0.4095 MVMPDGVLAIMNGTVDAVDSSSSLSKTCRKNSPILIFSFFHKAIRSELDSLHRAALDFATNQHAAASDIKPLFDRCNFLRTIYKHHCNAEDEVIFPALDIRVKNVARTYSLEHEGEGLLFDQLFKLLNSSLIEEEVYRRELASCTGALRTSISQHMFKEEEQVFPLVIENFSLKEQASLVWQFLCSLPVKMMAEFLPWLASYVSSDEHQDMLKCLCSIIPKEKLLQQVVFGWMEGVKIKCRSCINDTKAHCENVGTHDLTNCSEKVYCASEPSKTGKRKWMELSIDHTSSYSSCPIDEILFWHKAIKQELIDLTEAVRKIQVSGKFSDLSAFNGRLQFITEVCIFHSIAEDKVIFPAIDADISFLDEHADGELQFDKLRSLMEGIQNAEVNSSSTEDYMKLMSHTEQIKDTMLNHFDNEEAQVLPIARKHFSPQRQRELLYESLRLMPLKLIESVIPWLVGFLSEEEAKLFLLNMYMAAPTTDYALITLFSGWACKRKSGNNGSFSSKTGLCSARKLSEIENTSPSFCICVPSFSPEKKYASIQQDDANGSRGPVKHGKLELRDGNDVSCLTGTRESFTLPDNQTCCVPGLGVNASHLGANSLVPAKSLRSLSNGSVPSLNSTLFAWETDVVSADNGFKIRPIDNIFKFHKAICKDLEYIDVESGKLFDCDENFLRKFTGRFRLLWGLYRAHSNAEDDIVFPELESKETLHNVSHSYTLDHKQEEKLFVDISFGLSELTQLHESLNNKNSSEHVTSLYSDYSVRSDTMQKYNELVTKIQGMCKSIRVTLDQHIFREELELWPLFDVHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFNEWLNEWWEGPASTSNTTTPSDHVSLGADAFGNLDHSLQAFRPGWKDIFRMNQNELESEIRKVSRDSTLDPRRKSYLIQNLMTSRWIASQQKSSKATTDEFGNGDVLERSPSFHDPETNIFGCEHYRRNCKLLASCCGKLFSCRFCHDKVSDHSMDRKATTEMMCMRCLQLQPIGPVCATPSCGGLSMAKYYCSICKFFDDEREVYHCPFCNICRLGKGLGVDSFHCMQCNCCLSMKLVDHQCQEKSLETNCPICCDFLFTSSTSVRALPCCHFMHSTCFQAYTCSHYTCPICRKSLGDMAVYFGMLDALLASEELPEEYQNRRQDILCNDCEKKGTAPFHWLYHKCGLCGSYNTRLTDAKCHSFHPLVELIAYLVSYLSPSSPN 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1546 1246 CDD Hr-like 646 802 - -
Lele50g1546 1246 SMART ring_2 1113 1154 IPR001841 -
Lele50g1546 1246 Gene3D nmb1532 protein domain like 639 867 - -
Lele50g1546 1246 SUPERFAMILY RING/U-box 1112 1159 - -
Lele50g1546 1246 ProSiteProfiles Zinc finger RING-type profile. 1113 1155 IPR001841 -
Lele50g1546 1246 FunFam Zinc finger protein BRUTUS 637 867 - -
Lele50g1546 1246 Pfam Zinc-ribbon 1160 1217 IPR039512 -
Lele50g1546 1246 CDD RING-H2_Pirh2 1112 1155 - -
Lele50g1546 1246 Pfam Hemerythrin HHE cation binding domain 41 167 IPR012312 -
Lele50g1546 1246 Pfam Hemerythrin HHE cation binding domain 295 427 IPR012312 -
Lele50g1546 1246 CDD Hr-like 297 425 - -
Lele50g1546 1246 SUPERFAMILY Zinc hairpin stack 1050 1105 IPR037275 -
Lele50g1546 1246 Gene3D nmb1532 protein domain like 31 185 - -
Lele50g1546 1246 Gene3D nmb1532 protein domain like 296 442 - -
Lele50g1546 1246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1106 1157 IPR013083 -
Lele50g1546 1246 ProSiteProfiles Zinc finger CHY-type profile. 977 1046 IPR008913 GO:0008270
Lele50g1546 1246 CDD Hr-like 36 165 - -
Lele50g1546 1246 FunFam Zinc finger protein-related isoform 1 1108 1157 - -
Lele50g1546 1246 Pfam CHY zinc finger 984 1059 IPR008913 GO:0008270
Lele50g1546 1246 SUPERFAMILY CHY zinc finger-like 976 1040 IPR037274 GO:0008270
Lele50g1546 1246 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 685 1221 - -
Lele50g1546 1246 ProSiteProfiles Zinc finger CTCHY-type profile. 1049 1112 IPR017921 -
Lele50g1546 1246 Gene3D - 1183 1225 - -
Lele50g1546 1246 Pfam Ring finger domain 1112 1155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1546 Lele-ChrLele50 20680058 20687995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1546 21 1222 C2H2 Transcription Factor Family AT3G18290 61.253 0.0 1477