Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1545 ATGGAAGGACAGTCTGCCCCAGCAATTCGACGAGATCCATATGAGGTATTGTCTGTGTCAAGGGAAGCAAATGATCAGGAGATAAAGACCGCTTACAGAAAGCTCGCTCTCAAGTATCACCCTGACAAAAATGCTGACAATCCTGAAGCTTCAGAACTCTTTAAAGAGGTTGCATTTTCATACAGTATCTTGTCTGACCCAGAGAAGAGAAGGCAATATGATAGTGCTGGATTTGAGGCACTTGAAGCAGACAGCATGGACATGGAAGTTGACTTGTCCAATCTTGGAACTGTCAACACAATGTTTGCAGCTTTGTTCAGCAAGCTGGGTGTCCCTATCAAGACCACCATTTCAGCTAATGTTCTTGAAGAAGCTCTGAACGGCACAGTTACAGTCAGACCCCTTCCAATTGGAACATCAGTCAGTGGAAAGGTGGAGAAGCAAGGTGCTCATTTCTTTGGTGTGACAATAAATGAGCGCCAAGCTGAATCAGGGGTTGTAATAAGAGTCACGTCAACTGCACAAAGCAAATTCAAGTTGCTCTACTTCGAACATGAAGCAAATGGTGGCTATGGCTTAGCATTGCAGGAAGACAGTGAAAAGACTGGCAGGGTGACATCTGCAGGAATGTATTTCTTACATTTTCAAGTGTACAGATTGGATTCAACCGTGAATGCCTTAGCAATGGCAAAAGATCCTGAAGCTGCCTTCTTCAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTCTCAGAACTAAAGCCTGGCACTCATATATTTGCAGTTTATGGAGATAACTTCTTTAAGACTGCCAGCTATACCATTGAGGCACTTTGCGCAACATCATACGAGGATACCACCCAAAAACTTAAGGACATCGAGGCCAAAATTTTATTAAAAAGGAATGAGCTACGCCAATTTGAAACAGAATACAGAAAGGCATTGGCACACTATCAAGAAGTGACTGAAATATACACCAAAGAAAAGCAAGCAGTAGACGAGCTCCTGAAGCAGAGAGATGGCGTCCATTCTTGCTTCACTGTTTCCAGGCCAATCATTTCTAGTGGGAATGGTAGTAATCTGAGTAATGGAAGTAGTAGCAAGAAATTCTCTGGTGAAGATTCCAAATCAGAGAGCCCTAAGGAAGATGGAAGCTCGGATGGCAAGGATAAATCTGGAAGAAAGAAATGGTTTAATCTCAATCTTAATGGTTCTGGTAAGAGAATGTTTTGA 1230 0.426 MEGQSAPAIRRDPYEVLSVSREANDQEIKTAYRKLALKYHPDKNADNPEASELFKEVAFSYSILSDPEKRRQYDSAGFEALEADSMDMEVDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQGAHFFGVTINERQAESGVVIRVTSTAQSKFKLLYFEHEANGGYGLALQEDSEKTGRVTSAGMYFLHFQVYRLDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEALCATSYEDTTQKLKDIEAKILLKRNELRQFETEYRKALAHYQEVTEIYTKEKQAVDELLKQRDGVHSCFTVSRPIISSGNGSNLSNGSSSKKFSGEDSKSESPKEDGSSDGKDKSGRKKWFNLNLNGSGKRMF 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1545 409 SMART dnaj_3 11 69 IPR001623 -
Lele50g1545 409 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 8 406 - -
Lele50g1545 409 Coils Coil 282 309 - -
Lele50g1545 409 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Lele50g1545 409 FunFam Chaperone protein dnaJ 16 1 94 - -
Lele50g1545 409 Pfam DnaJ domain 12 74 IPR001623 -
Lele50g1545 409 MobiDBLite consensus disorder prediction 356 409 - -
Lele50g1545 409 Gene3D DnaJ domain 3 95 IPR036869 -
Lele50g1545 409 CDD DnaJ 12 66 IPR001623 -
Lele50g1545 409 MobiDBLite consensus disorder prediction 370 395 - -
Lele50g1545 409 SUPERFAMILY Chaperone J-domain 11 82 IPR036869 -
Lele50g1545 409 PRINTS DnaJ domain signature 14 32 IPR001623 -
Lele50g1545 409 PRINTS DnaJ domain signature 32 47 IPR001623 -
Lele50g1545 409 PRINTS DnaJ domain signature 69 88 IPR001623 -
Lele50g1545 409 PRINTS DnaJ domain signature 49 69 IPR001623 -
Lele50g1545 409 ProSiteProfiles dnaJ domain profile. 12 77 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1545 Lele-ChrLele50 20662108 20667674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1545 5 84 C2H2 Transcription Factor Family AT1G74250 41.176 8.58e-12 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1545 50 20662108 20667674 Lele50g1545 50 20662108 20667674 ECH
Lele50g1545 50 20662108 20667674 Lele51g1293 51 8632023 8637784 hybridization
Lele50g1545 50 20662108 20667674 Lele52g1503 52 19040553 19047250 hybridization