Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1544 ATGGAGGATCACCAAATTCTCTACCCTTCTAAACCAGCAAACCCCTTAAAGCTTTTCGGCTTCAGCGTCCAAGGCCACAATCCACACGTCCTCCAAGTTGAAGAAGACGAAGCAGTGCTTGCAGATGATGTCTCAGGTCCAACCTCCAAGCCAACTTCCCCATCTGGATCGCCTGATTCCGCCGCATCCCTCGGTGCCGGAGCTTTCACTGCTTCCTCCGGCGACAGGAAATACGAGTGTCAGTATTGTTGTCGCGAGTTTGCCAACTCTCAGGCCCTCGGTGGCCACCAGAACGCTCACAAGAAAGAGCGACAGCAGCTGAAGCGGGCCCAGTTACAAGCCTCACGAAACGCCGCCGTTTCGTTCGTGAGGAACCCGATAATCTCTGCCTTCGCCCCTCCGCCTCATTTGCTTCCTCCTGCTGGCCACGTCATGGTTCCAGCAGCTACTACTCCGTCGTCCTGGGTCTATGTCCCTCCACGTGCTGCTCCTCAACCGTACCACGTGTCGGTATCACACGGGTGCTTGTTCCCTTCGTCGACCAATAGTACCATCGGTGGCAGTAATAGTAATCAGGGTGGGAGGTCGACGGGCGGCGGGATGTTCTCCTGTGGTGGCAGCACAGGGGAGTCCATGGGATCTCAATTACACGGTAGGGCCCATGGGCCAACTTTAAGTAGATTTTCACAAGCGGATGGTGGGCCCAACTTCGATGACCCGTTCGGCTTGGACTTGCATCTAAGCCTTGCACCAGCTGCGCCATGA 765 0.5608 MEDHQILYPSKPANPLKLFGFSVQGHNPHVLQVEEDEAVLADDVSGPTSKPTSPSGSPDSAASLGAGAFTASSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQASRNAAVSFVRNPIISAFAPPPHLLPPAGHVMVPAATTPSSWVYVPPRAAPQPYHVSVSHGCLFPSSTNSTIGGSNSNQGGRSTGGGMFSCGGSTGESMGSQLHGRAHGPTLSRFSQADGGPNFDDPFGLDLHLSLAPAAP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1544 254 SUPERFAMILY beta-beta-alpha zinc fingers 74 105 IPR036236 -
Lele50g1544 254 MobiDBLite consensus disorder prediction 183 214 - -
Lele50g1544 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Lele50g1544 254 MobiDBLite consensus disorder prediction 46 60 - -
Lele50g1544 254 MobiDBLite consensus disorder prediction 183 239 - -
Lele50g1544 254 MobiDBLite consensus disorder prediction 37 64 - -
Lele50g1544 254 Gene3D Classic Zinc Finger 62 125 - -
Lele50g1544 254 FunFam Zinc finger protein 6 68 128 - -
Lele50g1544 254 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Lele50g1544 254 PANTHER ZINC FINGER PROTEIN 5 12 253 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1544 Lele-ChrLele50 20646507 20647271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1544 16 252 C2H2 Transcription Factor Family AT1G68360 44.828 1.55e-50 164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1544 50 20646507 20647271 Lele50g1544 50 20646507 20647271 ECH
Lele50g1544 50 20646507 20647271 Lele51g1294 51 8650645 8651418 hybridization
Lele50g1544 50 20646507 20647271 Lele52g1502 52 19025223 19025987 hybridization