LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele50g1539	ATGGGCATTATATATGAAGAAGCCCCTCATTGGACCCTCTATTCCAAAATCTCTTCCTTGTATAATCTTTCATTTCTCTTTCTCTTCAATCACAGAGTCTTCTTATCACCATCATCATCAGCCATGTCCGCATCTACAAAACCAGAGGCTGGTGGCTCTAATGAAGAAGAAACTGAGCTCAGAAGAGGACCTTGGACTCTCGAAGAAGACAGTTTACTCATACACTGTATCGCCCTCCACGGCGAACGTCGTTGGAACATGTTAGCCAAAACTGCAGGATTGAAGAGAACAGGAAAGAGTTGCAGGTTGAGGTGGCTCAACTACTTGAAACCGGACATCAAGAGAGGGAACTTAACTCCACAAGAGCAACTCTTGATCCTTGAACTCCATTCCAAATGGGGCAACAAGTGGTCGAAAATTGCTCAGCATCTGCCAGGAAGAACAGACAATGAGATTAAGAATTATTGGAGGACAAGAAATCAGAAACAGGCACGCCAGCTCAACATTGAATCTGGTAGTGACAGATTCATCGATGCTGTTCGATGTTTCAGGATGCCTAGGTTGTTACAAAAGATGGAGCAAACCTCTTCATTCTCCTCTTCCTCTTCCTCTGTTATAAACATCAACTATGAGAACTCTGCAATTCATGTCCCTTCCCTGTCTCCTCCACAAGGAGAATTCACAGATATTGCAGCAAATCATACCACCACCACCAACAACAACAATCTTAATTTCCCAGATCATTGTCCCCTGCAATTACAAGAGCCGTTTGAAATATCAGAAAACCAGACAAGTACTTCTCTTCCTCAAGCGTCGGAGAACTACAACAATAATGTTTGCTTCAATAATCCAGTTGAAGATCATAGTTATGGTATGGAAGGTCTGAACTTAGAGCAATTTTCAAGAAGTGAAAGTAATTATCGGATTCCCCAGTTTGATTATTGTCAGAGTTCAGAAAGTGAATGGGGGTCAAGCAGCGTGGGGGAATATTCTTTGTGGAGTTTGGATGAAATGTGA	1017	0.4238	MGIIYEEAPHWTLYSKISSLYNLSFLFLFNHRVFLSPSSSAMSASTKPEAGGSNEEETELRRGPWTLEEDSLLIHCIALHGERRWNMLAKTAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNKWSKIAQHLPGRTDNEIKNYWRTRNQKQARQLNIESGSDRFIDAVRCFRMPRLLQKMEQTSSFSSSSSSVININYENSAIHVPSLSPPQGEFTDIAANHTTTTNNNNLNFPDHCPLQLQEPFEISENQTSTSLPQASENYNNNVCFNNPVEDHSYGMEGLNLEQFSRSESNYRIPQFDYCQSSESEWGSSSVGEYSLWSLDEM	338

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele50g1539	338	ProSiteProfiles	Myb-like domain profile.	110	160	IPR001005	-
	Lele50g1539	338	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	56	254	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Lele50g1539	338	SUPERFAMILY	Homeodomain-like	60	156	IPR009057	-
	Lele50g1539	338	ProSiteProfiles	Myb-like domain profile.	57	109	IPR001005	-
	Lele50g1539	338	SMART	sant	61	111	IPR001005	-
	Lele50g1539	338	SMART	sant	114	162	IPR001005	-
	Lele50g1539	338	Pfam	Myb-like DNA-binding domain	62	109	IPR001005	-
	Lele50g1539	338	Pfam	Myb-like DNA-binding domain	115	158	IPR001005	-
	Lele50g1539	338	FunFam	Myb transcription factor	62	114	-	-
	Lele50g1539	338	Gene3D	-	118	159	-	-
	Lele50g1539	338	FunFam	MYB transcription factor	118	160	-	-
	Lele50g1539	338	Gene3D	-	59	115	-	-
	Lele50g1539	338	MobiDBLite	consensus disorder prediction	39	61	-	-
	Lele50g1539	338	CDD	SANT	119	158	IPR001005	-
	Lele50g1539	338	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	59	109	IPR017930	-
	Lele50g1539	338	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	110	164	IPR017930	-
	Lele50g1539	338	CDD	SANT	64	109	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele50g1539	Lele-ChrLele50	20592854	20594068	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele50g1539	57	201	MYB Transcription Factor Family	AT1G68320	79.310	2.94e-80	244

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele50g1539		Myb_DNA-binding	3.5e-14	CL0123