Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1533 ATGGATGCTGCCCCCGTCTTCAACCGCAACCGCCGCAAAGAGAAGGTGATTGTCATACTGGGAGCCACCGGTGCCGGAAAATCCAGCCTCTCCATTGACCTCGCAACCCGTTTCCCCTTCTTCGAAATCATTAACTCAGATAAAATGCAGGTGTACAGAGGCCTCGACATCACCACCAACAAGATCCCTATTGACGAGCGCAACGGTGTCCCTCATCATCTGCTCGGCGACATCGACCCAGAAAACGGAGACTTCACGCCTTTAAATTTTCGCTTGCGCGCAGGCTCTATCATCTCCGACATTACTTCCAGGAGGAAGCTTCCCATTGTCGTTGGAGGGTCTAACTCGTTCGTTCACGCTCTTCTCGCCGACCGATTCGACCCCGATGTAAATGTATTCGATGGGTCATCGTCGTCGTCGAGTTTGATCTCGTCGGAGTTGAGATACGAGTGCTGCTTTTTGTGGGTGGACGTGGAATTTCCGTTGTTGTCAGATTACTTAATGAAGCGAGTCGACGCCATGCTCGACTTGGGAATGGTGGAAGAGTTAGCCGAGTTCTTCGACCCGGACGCTGTTGATTTAGAAGATGACTCGGAGGACCGGACGGGATTGAGAAAAGCCATCGGCGTGCCGGAGTTCGACCGGTATTTCAAGAGATACCCGCCGCCGCGAGGGCTGAGCGCGGAGTGTAGAAGCGAGGAGGATCGAGTACGGAAGGGTGCATACGAAGAGGCGGTGAGGGCGATAAAGGACAACACGTGTCGGTTAGTGAAGAAACAGATAGAGAAAATCTTGCGGCTAAGATGGTCGGGGTGGGACCTACGGAGGGTAGACGCGACGGAGGTGTTCAGGGCGAAGTTGGGTGGAGATGGCGGCGAGAGGTGGTCGGATATTTGGGAGAGTGATGTGCTTGAGCCTAGCGTGAAGATTGTGAATAGCTTCTTGCGGGAGTAG 954 0.5377 MDAAPVFNRNRRKEKVIVILGATGAGKSSLSIDLATRFPFFEIINSDKMQVYRGLDITTNKIPIDERNGVPHHLLGDIDPENGDFTPLNFRLRAGSIISDITSRRKLPIVVGGSNSFVHALLADRFDPDVNVFDGSSSSSSLISSELRYECCFLWVDVEFPLLSDYLMKRVDAMLDLGMVEELAEFFDPDAVDLEDDSEDRTGLRKAIGVPEFDRYFKRYPPPRGLSAECRSEEDRVRKGAYEEAVRAIKDNTCRLVKKQIEKILRLRWSGWDLRRVDATEVFRAKLGGDGGERWSDIWESDVLEPSVKIVNSFLRE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1533 317 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 13 315 IPR039657 -
Lele50g1533 317 FunFam Adenylate isopentenyltransferase 160 274 - -
Lele50g1533 317 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 160 274 - -
Lele50g1533 317 Pfam IPP transferase 146 261 - -
Lele50g1533 317 Pfam IPP transferase 50 126 - -
Lele50g1533 317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 195 IPR027417 -
Lele50g1533 317 Gene3D - 13 315 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1533 Lele-ChrLele50 20538862 20539815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1533 132 315 C2H2 Transcription Factor Family AT2G27760 28.365 7.38e-14 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1533 50 20538862 20539815 Lele50g1533 50 20538862 20539815 ECH
Lele50g1533 50 20538862 20539815 Lele51g1304 51 8750536 8751606 hybridization
Lele50g1533 50 20538862 20539815 Lele52g1488 52 18896630 18897697 hybridization