Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1531 ATGGACCACCTCAAAAAGAGACCAGAAGAGAACCCGTTAGACCTCAACAATTTGCCTGATGACTTCCATAGAGATGGCAAACAAGTCCACGAAGATATCTCCTCATCTGATTGCAGGAAAAAGAAAAACGGCTGCAAGGTTGGAAAAGAAGAGTGTGGTAAGGTCTACGAGTGTAGGTTTTGTTCCCTCAAGTTCTGCAAATCTCAGGCTCTCGGAGGTCACATGAACCGTCACCGTCAAGAAAGGGAAACCGAGACGCTGAACCATGCTCGTCAGCTCGTCTTCCGTAGCGATCACACCATCGCCGCCCAAGGGGCCCCTCACTTAGGGTGCTGCCAACCAGTAGTAGCAGGAAGCTACGGAGGGGGAGGAGGGAGCAACATGGGAGATCCCACAATGCCTCTGAGATTTCCGAGGTACTTGTCGGGTTCATCGTCCAGCCACCACATATCACCACCGCCACCTCCACCGCCAGTACCAGCGCAGCCGTACATGTACGCGTCCCCGTCGTCCCGAGGAACAGTAGTATCATCATATCCGGCGTCACACTACAACTCGAACGGTGGCAGCGGCTATGTGGGTCACGTTCTGCACAACTACGTGGGGGAGTCATCGAGCTACACCTGTATCGGTGCACCAGTGGGTGGTGGTCAAGCGTTCGTTGGCAAGGACGGGACACTGCAGAATCAGGAAGAGGGTTTGAATTGGGGAAGGAGCTATTCAGCGATCAATCGGTTTCAAGATGGCTTCTAA 753 0.5339 MDHLKKRPEENPLDLNNLPDDFHRDGKQVHEDISSSDCRKKKNGCKVGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRSDHTIAAQGAPHLGCCQPVVAGSYGGGGGSNMGDPTMPLRFPRYLSGSSSSHHISPPPPPPPVPAQPYMYASPSSRGTVVSSYPASHYNSNGGSGYVGHVLHNYVGESSSYTCIGAPVGGGQAFVGKDGTLQNQEEGLNWGRSYSAINRFQDGF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1531 250 PANTHER ZINC FINGER PROTEIN JAGGED 34 174 IPR045320 GO:0003700
Lele50g1531 250 Gene3D Classic Zinc Finger 32 107 - -
Lele50g1531 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Lele50g1531 250 MobiDBLite consensus disorder prediction 1 44 - -
Lele50g1531 250 SUPERFAMILY beta-beta-alpha zinc fingers 54 84 IPR036236 -
Lele50g1531 250 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Lele50g1531 250 FunFam Zinc finger protein STAMENLESS 1 31 104 - -
Lele50g1531 250 MobiDBLite consensus disorder prediction 140 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1531 Lele-ChrLele50 20499646 20503210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1531 9 217 C2H2 Transcription Factor Family AT1G13400 44.091 4.05e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele50g1531 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1531 50 20499646 20503210 Lele50g1531 50 20499646 20503210 ECH
Lele50g1531 50 20499646 20503210 Lele51g1307 51 8776686 8778828 hybridization
Lele50g1531 50 20499646 20503210 Lele52g1486 52 18864012 18865664 hybridization