Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele50g1531 | ATGGACCACCTCAAAAAGAGACCAGAAGAGAACCCGTTAGACCTCAACAATTTGCCTGATGACTTCCATAGAGATGGCAAACAAGTCCACGAAGATATCTCCTCATCTGATTGCAGGAAAAAGAAAAACGGCTGCAAGGTTGGAAAAGAAGAGTGTGGTAAGGTCTACGAGTGTAGGTTTTGTTCCCTCAAGTTCTGCAAATCTCAGGCTCTCGGAGGTCACATGAACCGTCACCGTCAAGAAAGGGAAACCGAGACGCTGAACCATGCTCGTCAGCTCGTCTTCCGTAGCGATCACACCATCGCCGCCCAAGGGGCCCCTCACTTAGGGTGCTGCCAACCAGTAGTAGCAGGAAGCTACGGAGGGGGAGGAGGGAGCAACATGGGAGATCCCACAATGCCTCTGAGATTTCCGAGGTACTTGTCGGGTTCATCGTCCAGCCACCACATATCACCACCGCCACCTCCACCGCCAGTACCAGCGCAGCCGTACATGTACGCGTCCCCGTCGTCCCGAGGAACAGTAGTATCATCATATCCGGCGTCACACTACAACTCGAACGGTGGCAGCGGCTATGTGGGTCACGTTCTGCACAACTACGTGGGGGAGTCATCGAGCTACACCTGTATCGGTGCACCAGTGGGTGGTGGTCAAGCGTTCGTTGGCAAGGACGGGACACTGCAGAATCAGGAAGAGGGTTTGAATTGGGGAAGGAGCTATTCAGCGATCAATCGGTTTCAAGATGGCTTCTAA | 753 | 0.5339 | MDHLKKRPEENPLDLNNLPDDFHRDGKQVHEDISSSDCRKKKNGCKVGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRSDHTIAAQGAPHLGCCQPVVAGSYGGGGGSNMGDPTMPLRFPRYLSGSSSSHHISPPPPPPPVPAQPYMYASPSSRGTVVSSYPASHYNSNGGSGYVGHVLHNYVGESSSYTCIGAPVGGGQAFVGKDGTLQNQEEGLNWGRSYSAINRFQDGF | 250 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele50g1531 | 250 | PANTHER | ZINC FINGER PROTEIN JAGGED | 34 | 174 | IPR045320 | GO:0003700 | |
Lele50g1531 | 250 | Gene3D | Classic Zinc Finger | 32 | 107 | - | - | |
Lele50g1531 | 250 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 56 | 83 | IPR013087 | - | |
Lele50g1531 | 250 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Lele50g1531 | 250 | SUPERFAMILY | beta-beta-alpha zinc fingers | 54 | 84 | IPR036236 | - | |
Lele50g1531 | 250 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 58 | 78 | IPR013087 | - | |
Lele50g1531 | 250 | FunFam | Zinc finger protein STAMENLESS 1 | 31 | 104 | - | - | |
Lele50g1531 | 250 | MobiDBLite | consensus disorder prediction | 140 | 161 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele50g1531 | Lele-ChrLele50 | 20499646 | 20503210 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele50g1531 | 9 | 217 | C2H2 Transcription Factor Family | AT1G13400 | 44.091 | 4.05e-33 | 117 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lele50g1531 | None | None | None |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele50g1531 | 50 | 20499646 | 20503210 | Lele50g1531 | 50 | 20499646 | 20503210 | ECH | |
Lele50g1531 | 50 | 20499646 | 20503210 | Lele51g1307 | 51 | 8776686 | 8778828 | hybridization | |
Lele50g1531 | 50 | 20499646 | 20503210 | Lele52g1486 | 52 | 18864012 | 18865664 | hybridization |