Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1521 ATGAAGACTAACAATTTCAGCAAGAAGCTGAAGCAGAAGCAAAATCCCATTCCTTCGAGAAAGCTTCGCATAATCTGTGACGACCCTTATGCGACAGATTTGTCTTCAAGCGAAGACGAAGAAGAACGACGACGGCCGAGGAAGATGAAACGAATCGTTCGTGAGCTCACTCTTCCTCTTTCTTCTGCCATGTCTAAATCCACTGAAACTGAAAGCTCATTTCAGGAGAGCAACAATGGAGTCATCATCAAGACTTGTTCCTCCTTCCAGTTCTCAGCAGATGGTCAAACCCAGAACAAGAAGAGGGTTTTGACCAAAACTCCATCAACGAAAAGCTCGTCTTCTTCGTCGAGATTTAGAGGCGTTCGTCAGAGAAAATGGGGGAAATGGGCTGCTGAAATTCGTGATCCATTTAAAGGTGTTCGTATCTGGCTTGGTACTTATAATACTGCACAGGAAGCTTCTCAAGCTTATGAAGCGAAGAAGATGGAGTTTGAAGCCATGGCTAAAGCTCAAGCTCAGGCTCAGGCTCAGGCTCAGGCTCAATCTGAGAAGAGTTACATTGTTTCTTCTTCTTCAGCTCAAGTTGCTGCTTGTGTGTCCGAAGATTCTGAGAGTGTCTTCTCTCAAACATCACCTTCCTCTGTGCTTGAGCTCGACACCTCAACTTCCAAATCCACTGGAGAAGGCGATGCCAACATCGTCAATAGCAGTTCAAGCGAAGAACAAAAAGAAGAAAATCAACCAGAACAAGAAGAAACAGCAGTAACTACAACTATGGAGGCTGAAGATTTTGGGAATGAATTGGCAGAACTCCAAATCCCACATTTGAGCTTCCTGAACGAGCCGCCAGTGGTACAAGCAGCAGAGACAACAACAACATCATCTGCAGCAGCAGCAGTAGATGTCTTAGTTTCAGACATGAACCTGGGATTCGATCTGGACTGGGTAATGTCCGAGGATTTTGGTCAGGGTTTGGAAGATCCTTTTGGTTTAGACGACATGCAAATATTTGGGTTTGATGAGGATGACATGAATGCAAGTGAGCTGCCTGATTTTGATTTTGATCTGTGTGCTGATGAGTTTGCTGGTTGGACTGAGGGCCCCCTCAATATACCTTGCGTATAA 1128 0.4495 MKTNNFSKKLKQKQNPIPSRKLRIICDDPYATDLSSSEDEEERRRPRKMKRIVRELTLPLSSAMSKSTETESSFQESNNGVIIKTCSSFQFSADGQTQNKKRVLTKTPSTKSSSSSSRFRGVRQRKWGKWAAEIRDPFKGVRIWLGTYNTAQEASQAYEAKKMEFEAMAKAQAQAQAQAQAQSEKSYIVSSSSAQVAACVSEDSESVFSQTSPSSVLELDTSTSKSTGEGDANIVNSSSSEEQKEENQPEQEETAVTTTMEAEDFGNELAELQIPHLSFLNEPPVVQAAETTTTSSAAAAVDVLVSDMNLGFDLDWVMSEDFGQGLEDPFGLDDMQIFGFDEDDMNASELPDFDFDLCADEFAGWTEGPLNIPCV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1521 375 MobiDBLite consensus disorder prediction 210 242 - -
Lele50g1521 375 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Lele50g1521 375 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Lele50g1521 375 MobiDBLite consensus disorder prediction 97 118 - -
Lele50g1521 375 MobiDBLite consensus disorder prediction 1 52 - -
Lele50g1521 375 MobiDBLite consensus disorder prediction 36 52 - -
Lele50g1521 375 Pfam AP2 domain 117 167 IPR001471 GO:0003700|GO:0006355
Lele50g1521 375 SUPERFAMILY DNA-binding domain 117 165 IPR016177 GO:0003677
Lele50g1521 375 Gene3D AP2/ERF domain 117 174 IPR036955 GO:0003700|GO:0006355
Lele50g1521 375 SMART rav1_2 118 172 IPR001471 GO:0003700|GO:0006355
Lele50g1521 375 CDD AP2 118 160 IPR001471 GO:0003700|GO:0006355
Lele50g1521 375 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 260 - -
Lele50g1521 375 ProSiteProfiles AP2/ERF domain profile. 118 176 IPR001471 GO:0003700|GO:0006355
Lele50g1521 375 MobiDBLite consensus disorder prediction 210 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1521 Lele-ChrLele50 20353505 20354632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1521 18 374 AP2-EREBP Transcription Factor Family AT1G68550 34.605 7.38e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele50g1521 AP2 2.6e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1521 50 20353505 20354632 Lele50g1521 50 20353505 20354632 ECH
Lele50g1521 50 20353505 20354632 Lele51g1314 51 8888139 8889290 hybridization
Lele50g1521 50 20353505 20354632 Lele52g1474 52 18733428 18734582 hybridization