Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1499 ATGCGAGGCCTCGACCCGGCGCTGCTTCAAATCTTCCCCACTTTCCCCTACGCCTCCGTGAAGGAGTTTCAAAGGAAGAATAATAATAACAAAAGATATAGCCTAGAATGTGCGATTTGCTTGTTAGAATTCGAGGAAGATAGCGTCCTTCGCCTCTTGACCGTTTGCTGCCATGTCTTTCACCAAGAATGCATCGATCTCTGGCTTGAATCTCATAAAACATGCCCAGTTTGTCGCACAGATCTCGATTCTTCGTCAAAGGAAAAACGTCATCATCAGGAAAACCAAACAATAATAGAACAACCCTTAACAGAGAATAATCACAACAACAACAGCGAGACCCGTATTGATGTAAGGGAAGAAGAAGAAGGAGAAGGAAAAGAAGAGGAAATCTCAAGGAGAAGAGAGGAAGAGGAAGAAGTTGGAGAAGGAGAAGAGAATAATAGGTTTTCAAGGTCACATTCAACGGGACATTCAATAGTTCTGATAAAAGGGGAAGAAAATGATGAGAACAAGAATGGTGAAGATAAATATACGTTGAAATTACCAGAACATGTTCAGATTAAGCTGATAAGAGGACATAACTACACGCAGAGTTGTGCCTCTTACAGTGAGATAGCCAAACTTTATAGTAAATGTTGCTATGCTGAGGCCATATCATCAACCTGCACTACTTCTTCCTGCGAGCCTTTAAGGGTTTGA 702 0.416 MRGLDPALLQIFPTFPYASVKEFQRKNNNNKRYSLECAICLLEFEEDSVLRLLTVCCHVFHQECIDLWLESHKTCPVCRTDLDSSSKEKRHHQENQTIIEQPLTENNHNNNSETRIDVREEEEGEGKEEEISRRREEEEEVGEGEENNRFSRSHSTGHSIVLIKGEENDENKNGEDKYTLKLPEHVQIKLIRGHNYTQSCASYSEIAKLYSKCCYAEAISSTCTTSSCEPLRV 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1499 233 Pfam Ring finger domain 36 79 IPR001841 -
Lele50g1499 233 MobiDBLite consensus disorder prediction 97 111 - -
Lele50g1499 233 CDD RING-H2_EL5_like 36 79 - -
Lele50g1499 233 SUPERFAMILY RING/U-box 36 84 - -
Lele50g1499 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 87 IPR013083 -
Lele50g1499 233 Coils Coil 119 147 - -
Lele50g1499 233 PANTHER RING FINGER DOMAIN-CONTAINING 2 88 - -
Lele50g1499 233 FunFam E3 ubiquitin-protein ligase ATL6 1 85 - -
Lele50g1499 233 ProSiteProfiles Zinc finger RING-type profile. 37 79 IPR001841 -
Lele50g1499 233 MobiDBLite consensus disorder prediction 82 96 - -
Lele50g1499 233 SMART ring_2 37 78 IPR001841 -
Lele50g1499 233 MobiDBLite consensus disorder prediction 112 152 - -
Lele50g1499 233 MobiDBLite consensus disorder prediction 82 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1499 Lele-ChrLele50 20152723 20153424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1499 2 192 Rapid Response to Elicitors AT3G05200 37.824 4.92e-30 113