Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1496 ATGGGGGTTCGAGAATACATCGAAGCGTTAGAAGAAGAACGCCATAAAATTCAGATGTTCTCTAAAGAACTTCCGCTTTCACTCGAGCTTGTCTCGCAGGCCATTGAAGCTTACAGGCAACAACTTTCTACGACCACGGAGTACAATTTTCATGGACAATCGGATTGTTCGGAGCAGACTTCAATGGAAGAAGGCCCTGTTCTTGAAGAGTTCATTCCCATTAAGAAAAGGGCTTCCCCTGATTGTGACGACGAAGAAGACGAAGAAGATGAACATTATTCGCATAAGCCTAAGATTCTCAAGGAGAACAACAACAACAATAAGAACTCCGATAAGAAAAAATCTGACTGGCTCAGATCCGTTCAGCTCTGGAACCCAGATCCCCCTACTAAAGAGGATTTCCCGAGAAAAGCTACGGTGGTGGAAGTGAAGAGAAATGGAGGTGCGTTCCACCCATTTCAGAGAGAAGATAATAATAATTTTGGGAAGACGAACAAAAGCAACACATCGGCTGTAAAATCTGCATCTCCGGCTCCGGTGCCTGCAATGAGCTCCTCCTCCGGTGCCGTCACCGGCGTTGGCGGAAACAAGAGATCGGAGGAGAAAGAAGGGCAGGGTCCGAGGAAACAACGGCGGAGCTGGTCACCTGAATTACATAAACGCTTCTTACAAGCCCTTCAACAACTAGGCGGTCCAGATTCTGCAACTCCCAAACAGATCAGAGAGCTCATGATGGTCGATGGCCTCACAAACGATGAAGTCAAAAGCCACTTGCAGAAATTTCGTTTGCACACAAGAAGACCAAGTCCCATGATGCACAACAACGCTACTTCACAAACAGCTCCATTTGTTCTTGTTGGCAACATTTTTGTGCAACCACCGGAATATGCGGCAGCGGTGGCAACTTCAACAGCATCAGGTGAGGTAACTACGGTCACTACACCGACCGGAATTTACGCGCCGGTGGCGGCGCATCCCCCTGCGGCGGCTCCTCCTATGCCGGTGGTGGGTGCACGGCAGGTGGTGAAGCAATTGGAGCAGTCCGATTCGGATGAAGAAAGGGTGAATCACAGTAGTGAAGGAGCTGTTCATTCAAATTCTTCTCCTGATTCATCATCTTCCACACACACCACTTCTCATTCTCATGGATATTGA 1155 0.4831 MGVREYIEALEEERHKIQMFSKELPLSLELVSQAIEAYRQQLSTTTEYNFHGQSDCSEQTSMEEGPVLEEFIPIKKRASPDCDDEEDEEDEHYSHKPKILKENNNNNKNSDKKKSDWLRSVQLWNPDPPTKEDFPRKATVVEVKRNGGAFHPFQREDNNNFGKTNKSNTSAVKSASPAPVPAMSSSSGAVTGVGGNKRSEEKEGQGPRKQRRSWSPELHKRFLQALQQLGGPDSATPKQIRELMMVDGLTNDEVKSHLQKFRLHTRRPSPMMHNNATSQTAPFVLVGNIFVQPPEYAAAVATSTASGEVTTVTTPTGIYAPVAAHPPAAAPPMPVVGARQVVKQLEQSDSDEERVNHSSEGAVHSNSSPDSSSSTHTTSHSHGY 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1496 384 MobiDBLite consensus disorder prediction 344 384 - -
Lele50g1496 384 Gene3D - 208 266 - -
Lele50g1496 384 MobiDBLite consensus disorder prediction 157 193 - -
Lele50g1496 384 Coils Coil 3 23 - -
Lele50g1496 384 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 356 IPR044787 GO:0003700|GO:0006355
Lele50g1496 384 SUPERFAMILY Homeodomain-like 207 267 IPR009057 -
Lele50g1496 384 MobiDBLite consensus disorder prediction 72 216 - -
Lele50g1496 384 FunFam Myb family transcription factor 208 266 - -
Lele50g1496 384 MobiDBLite consensus disorder prediction 360 384 - -
Lele50g1496 384 MobiDBLite consensus disorder prediction 196 216 - -
Lele50g1496 384 Pfam Myb-like DNA-binding domain 211 260 IPR001005 -
Lele50g1496 384 MobiDBLite consensus disorder prediction 91 118 - -
Lele50g1496 384 MobiDBLite consensus disorder prediction 345 359 - -
Lele50g1496 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 266 IPR017930 -
Lele50g1496 384 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 209 264 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1496 Lele-ChrLele50 20122425 20124267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1496 5 375 G2-like Transcription Factor Family AT1G13300 44.624 3.87e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele50g1496 Myb_DNA-binding 2.4e-06 CL0123