Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1495 ATGCAGACTCATCAGTACTCTAATTTCTCCCACTTATCGTCATGTCTTGAAGCAGAACAAGTACTTGACGACGAACACTCCATTTCCCTCTCTCTTGGACCTCCTGGCCAACGCAACCACCGCCATCCTCATCATAATTCTTCCAAATCTTCTTCATCCAACGACGTCGTTTCTCTCCATCATCATCATCTTCATCACCACCAAAACCCTAGCTCCACTGATCTTGGCGTCACCGTGGCCCTTCATATCGGCCTTCCTACCACTACTACTAATGGTGGTGGTGGTAGTTCTGGCAAACCCGACCCGTTAATGAGTTCTTCTTCTCCTTCTTCGTCTTCGGGTCATGTTCCGGGTCAGTATTGGATTCCTTCTCCTGCTCAGATCCTTATCGGGCCCACCCAATTCTCTTGCTCTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCGCAGTATAGGAAAGGGCCAGAATCTCTGAGAGGGGCAAAACCAGCGTCTTCGATTCTGAGACTTCCCTGTTATTGTTGCGCCGAGGGTTGTCGGAACAACATTCACCATCCTAGGTCGAGGCCTTTGAAGGATTTCAGAACTCTTCAGACACACTACAAGAGGAAGCACGGAGCGAAGCCGTTCGGCTGCCGGAAATGCGGGAAGCCGTTCGCCGTGAGAGGAGATTGGAGGACTCACGAGAAGAACTGCGGCAAGCTCTGGTTCTGTATCTGTGGCTCCGATTTCAAACACAAGAGATCCCTCAAAGACCACGTACGGGCCTTTGGCGACGGCCACGCCCCTCACACCGTCGACAGCAGCCGCGACCACCATCACCACCAAGAAGAAGAAGTTGACGAGGAAGAAGACGAAGATGTCGAGGAAGAAGACGACGATAATAACAGTGACGTGTTCGTCTACAGCGGAAATCATGCGTCCATTTACTTCTGA 966 0.5072 MQTHQYSNFSHLSSCLEAEQVLDDEHSISLSLGPPGQRNHRHPHHNSSKSSSSNDVVSLHHHHLHHHQNPSSTDLGVTVALHIGLPTTTTNGGGGSSGKPDPLMSSSSPSSSSGHVPGQYWIPSPAQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSILRLPCYCCAEGCRNNIHHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVDSSRDHHHHQEEEVDEEEDEDVEEEDDDNNSDVFVYSGNHASIYF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1495 321 SUPERFAMILY beta-beta-alpha zinc fingers 125 156 IPR036236 -
Lele50g1495 321 PANTHER ZINC FINGER PROTEIN WIP2 28 296 IPR043584 GO:0003700|GO:0010468
Lele50g1495 321 Gene3D Classic Zinc Finger 134 157 - -
Lele50g1495 321 MobiDBLite consensus disorder prediction 268 289 - -
Lele50g1495 321 MobiDBLite consensus disorder prediction 268 321 - -
Lele50g1495 321 MobiDBLite consensus disorder prediction 28 73 - -
Lele50g1495 321 MobiDBLite consensus disorder prediction 86 118 - -
Lele50g1495 321 Gene3D Classic Zinc Finger 196 272 - -
Lele50g1495 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 162 IPR013087 -
Lele50g1495 321 ProSitePatterns Zinc finger C2H2 type domain signature. 137 157 IPR013087 -
Lele50g1495 321 MobiDBLite consensus disorder prediction 290 307 - -
Lele50g1495 321 FunFam Zinc finger protein WIP2 189 271 - -
Lele50g1495 321 SUPERFAMILY beta-beta-alpha zinc fingers 205 240 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1495 Lele-ChrLele50 20108807 20110295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1495 24 276 C2H2 Transcription Factor Family AT1G13290 69.261 3.67e-120 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele50g1495 None None None