LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele50g1492	ATGGCCACTGTCGCTACAGCTCGAGGAATAGGCGTAGGAGCAACGAAGCTTCCCCAAAGACCCCATCATGTTCAATCCAACAACGGCAATAAGTCTCTCTTTTTGGGCCAGAAACTTCGAAATAAACCCTCTGTTATAGAATCCCTATTTGGTGGAAGAATCACACCCTTCTCGAACCCTAAATCGTTCGTGGCCTGCTCATTGGGAGGTGAATGGCTCGATTCGATTCATCACCTGTTTGTGGGTGTTGGGGTTGGGCTTCCTTGTACGGTTATGGAGTGTGGCGACATAATCTACAGAAGTACTCTTCCGAAGTCGAATGGCTTGACGATTACTACTCCTGGCGTGGTTTTGGCTCTCGGTGCTGTGTCCTACCTCTGGGCTACGCCTGGTGTGGCCCCTGGTTTCTTTGACATGTTTGTTCTTGCCTTTGTTGAAAGATTGTTCAGACCTACTTTTAGAAAGGATGACTTTGTCCTAGGGAAGAAGTTGGGTGAGGGATCCTTTGGTGTAGTTTATAGGGTTTCATCGACCAAGAAGCCCGCTTCAAAGGAAGGTGACTTGGTCTTGAAGAAGGCTACTGAATATGGTGCAGTAGAAATTTGGATGAATGAGCGTGTTCGCAGAGCTTGTGCAAACAGCTGTGCTGATTATGTTTATGGTTTCCTTGAGAGTTCTGGGAAGAAGGGTCGCGAATACTGGCTTATATGGAAATTTGAAGGAGATGCCACACTAGCAGACCTAATGCAGAGTAAAGAGTTCCCATATAATGTTGAAACAATGATTCTGGGCAAGTTCCAGGACTTGCCTAAGGGATTGGAAAGAGAAAATAGAATCATTCAAACAATTCTGAGGCAGATCTTGTTTGCATTGGACGGTCTTCACTCAACTGGAATCGTGCATAGGGATATTAAGCCCCAGAATATTATTTTCTCTGAAGGATCTCGTACATTCAAGATTATTGATCTTGGAGCTGCAGCAGATTTGCGAGTTGGCATCAACTATATTCCTAATGAGTTTCTTTTGGATCCAAGATATGCTGCCCCAGAGCAGTACATCATGAGCACACAAACTCCCTCTGCACCCTCAGCACCAGTTGCAACCGCACTTTCCCCAGTCCTATGGCAGTTGAATCTGCCGGACAGATTTGATATCTATAGTGCTGGTCTAATATTTCTTCAAATGGCATTCCCTGGATTACGCTCCGATAATTGCCTCATACAGTTTAACCGTCAGTTGAAGAGATGTGACTATGACTTGGTTGCATGGAGAAAAAGTGTAGAACCTCGTTGCGGTCCTGAACTAAGGAGAGGCTTTGAGCTTCTGGGTTTAGATGGTGGAGTAGGATGGGAACTTCTGACATCGATGGTCCGCTACAAAGCAAGGCAACGACTTAGTGCAAAAGCGGTGTTAGCTCATCCCTACTTTGACAGGGAAGGTTTGTTGGCACTGTCTTTCATGCAAAATCTAAGGTTGCAGCTGTTACGAGCAACACAGCAGGATTATGGAGAAGCAGCCAAATGGATTATTCAGCTCATGGCAAAATCTGGAACCTCACAAGTTGGAGGATTTACTGAAGCTCAGCTCCAGGAACTAAGAGAAATTGAACCAAAGAAGAAGAAGAACAGTGCGCCAAGAAATGCTCTGGCCTCAGCTCTCAAACTTCAGAGGAAGATCATAAAAACATTGAATGAGAGTGTGGATGAGCTTACCCGACGCAGGAAAAGTCTTTGGTGGAGCAGATGGATCCCCAGGGAAGAATGA	1764	0.4552	MATVATARGIGVGATKLPQRPHHVQSNNGNKSLFLGQKLRNKPSVIESLFGGRITPFSNPKSFVACSLGGEWLDSIHHLFVGVGVGLPCTVMECGDIIYRSTLPKSNGLTITTPGVVLALGAVSYLWATPGVAPGFFDMFVLAFVERLFRPTFRKDDFVLGKKLGEGSFGVVYRVSSTKKPASKEGDLVLKKATEYGAVEIWMNERVRRACANSCADYVYGFLESSGKKGREYWLIWKFEGDATLADLMQSKEFPYNVETMILGKFQDLPKGLERENRIIQTILRQILFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPNEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPGLRSDNCLIQFNRQLKRCDYDLVAWRKSVEPRCGPELRRGFELLGLDGGVGWELLTSMVRYKARQRLSAKAVLAHPYFDREGLLALSFMQNLRLQLLRATQQDYGEAAKWIIQLMAKSGTSQVGGFTEAQLQELREIEPKKKKNSAPRNALASALKLQRKIIKTLNESVDELTRRRKSLWWSRWIPREE	587

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele50g1492	587	Coils	Coil	553	573	-	-
	Lele50g1492	587	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	299	311	IPR008271	GO:0004672\|GO:0006468
	Lele50g1492	587	SMART	serkin_6	158	476	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele50g1492	587	Gene3D	Phosphorylase Kinase; domain 1	145	238	-	-
	Lele50g1492	587	CDD	STKc_SNT7_plant	162	476	-	-
	Lele50g1492	587	FunFam	Serine/threonine-protein kinase STN7, chloroplastic	267	481	-	-
	Lele50g1492	587	ProSiteProfiles	Protein kinase domain profile.	158	476	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele50g1492	587	PANTHER	SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED	72	561	-	-
	Lele50g1492	587	Pfam	Protein kinase domain	159	351	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele50g1492	587	Gene3D	Transferase(Phosphotransferase) domain 1	267	480	-	-
	Lele50g1492	587	SUPERFAMILY	Protein kinase-like (PK-like)	152	479	IPR011009	-
	Lele50g1492	587	ProSitePatterns	Protein kinases ATP-binding region signature.	164	191	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele50g1492	Lele-ChrLele50	20046721	20051489	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele50g1492	276	477	Core Cell Cycle Gene Families	AT2G38620	30.516	9.78e-17	78.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-4	Lele50g1492		Pkinase	1.4e-19	CL0016