Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1489 ATGATGAGTTGGAGGAGGGTGGCTAAGTCTCTGCAAGCCTTTGCAGCTCATGGTCTACTCTTCTCCTTCACGCTGTTGCTTGTTCTGAAGCTTGACCATGTCGTTAATTACTCATGGTGGACCATATTTTCGCCTCTATGGCTTTTTCATTCTGTTGTAGCACGAGGAAGGTTTTCCTTGCCTGCTCCTTCAATGCCTCATGATCGCCATTGGGCTCCGTGTCATGCTGTTGTAGCAACACCCTTACTTGTTGCTTTTGAGCTACTTCTTTGTATACACCTTGAGATCAGTTATGTGGTAAGTTTAAAGATTGTCATCTTACCCCTATTGGCTTTTGAAGTGGCAATTTTGATCGATAACATCAGGATGTGTAGGGCTTTAATGCCTGGAGATGATGAAAATATGGGTGATGAAGCAATATGGGAAACCCTTCCTCACTTCTGGGTTGCGATATCCATGGTCTTCTTTATTGCTGCTACGGTATTCACACTTCTTAAGTTATGTGGTGATGTTGCTGGTCTAGACTGGTGGGACTTATTTATTAACTATGGCATTGCAGAGTGCTTTGCCTTTCTTGTTTGTACAAAGTGGTACAATCCAACAATTCATGGAAAATGTCACATTGACAAAGCAGATCCCAGCTCATCATCACTTTCATCGTCACTTACTGTAAGATACCTGGACTGGGATACAGGTTTGGTGGTCTCTGCTGATGAAGAGAGGCAGCAAAGTCGCTTATGCAGTCTGCAGGACATTGGTGGGCATATCATGAAAATTCCATTCATAGCTTTTCAAATTATGCTAGTTATGCATTTACAGGGAACACCACCTGGTGCAAGAACTTTGTCGTGTGCTGTTGTCTTTTCTCCCCTTTTTCTGTTGCAAGGAGTTGGGGTTTTATTTGCGGCTTATAGATTAGGGGAGAAAATAGTTCTCGTAGTTTACAGTGGAGATGTTCCTGAAAGATACTCGGATATAGCACTAAAAGCCCGTGATTGTTTTGGATTCTTGCATCGTGGCTCAAGGCTGCTGGGTTGGTGGTCAATAGATGAAGGAAGTCGAGAGGAACAAGCCAGACTTTTTTGTGAGGGGGATTCTTCAGGGTATAAAACTTTCTCCCCTGATGTGGTGAAGAAAATGCCTAAAGCAGATCTTGTTGAGGAGATCTGGAAACTACAAGCTGCACTAGGTGAGCAGTCAGAGATTACAAAATTTAGCCAGCAGGAGTATGAAAGGCTCCAAAACGAAAGGGTCCTATGTAGAGTTTGCTTTGAAGAGCAGATTAATGTGGTCCTGCTTCCATGCAGGCATCGCGTTCTTTGCAGCACATGTGGTGAAAAGTGCAAGAGGTGCCCTATCTGCCGTGTTACCATTGAAGATCGAATACCTGTATATGATGTATAG 1404 0.4352 MMSWRRVAKSLQAFAAHGLLFSFTLLLVLKLDHVVNYSWWTIFSPLWLFHSVVARGRFSLPAPSMPHDRHWAPCHAVVATPLLVAFELLLCIHLEISYVVSLKIVILPLLAFEVAILIDNIRMCRALMPGDDENMGDEAIWETLPHFWVAISMVFFIAATVFTLLKLCGDVAGLDWWDLFINYGIAECFAFLVCTKWYNPTIHGKCHIDKADPSSSSLSSSLTVRYLDWDTGLVVSADEERQQSRLCSLQDIGGHIMKIPFIAFQIMLVMHLQGTPPGARTLSCAVVFSPLFLLQGVGVLFAAYRLGEKIVLVVYSGDVPERYSDIALKARDCFGFLHRGSRLLGWWSIDEGSREEQARLFCEGDSSGYKTFSPDVVKKMPKADLVEEIWKLQAALGEQSEITKFSQQEYERLQNERVLCRVCFEEQINVVLLPCRHRVLCSTCGEKCKRCPICRVTIEDRIPVYDV 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1489 467 SUPERFAMILY RING/U-box 411 461 - -
Lele50g1489 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Lele50g1489 467 Pfam Transmembrane Fragile-X-F protein 29 294 IPR019396 -
Lele50g1489 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 2 467 - -
Lele50g1489 467 SMART ring_2 420 454 IPR001841 -
Lele50g1489 467 FunFam Kinesin-like protein KIN-7D, mitochondrial 397 465 - -
Lele50g1489 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 466 IPR013083 -
Lele50g1489 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1489 Lele-ChrLele50 20000662 20010369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1489 2 467 C3H Transcription Factor Family AT1G73950 64.979 0.0 614